Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MID01_RS05530 Genome accession   NZ_CP092369
Coordinates   1074633..1075211 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZW     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069633..1080211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS05510 (MID01_05510) hemAT 1070144..1071442 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  MID01_RS05515 (MID01_05515) yhfW 1071581..1073110 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  MID01_RS05520 (MID01_05520) yhxC 1073222..1074079 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  MID01_RS05525 (MID01_05525) yhzC 1074107..1074340 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MID01_RS05530 (MID01_05530) comK 1074633..1075211 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  MID01_RS05535 (MID01_05535) yhxD 1075258..1076157 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  MID01_RS05540 (MID01_05540) yhjA 1076374..1076643 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  MID01_RS05545 (MID01_05545) yhjB 1076687..1078156 (-) 1470 WP_029317574.1 sodium:solute symporter -
  MID01_RS05550 (MID01_05550) yhjC 1078153..1078353 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MID01_RS05555 (MID01_05555) - 1078552..1078923 (-) 372 WP_014476361.1 hypothetical protein -
  MID01_RS05560 (MID01_05560) yhjE 1079075..1079698 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MID01_RS05565 (MID01_05565) lepB 1079700..1080206 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=656828 MID01_RS05530 WP_029317573.1 1074633..1075211(+) (comK) [Bacillus subtilis strain ZW]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=656828 MID01_RS05530 WP_029317573.1 1074633..1075211(+) (comK) [Bacillus subtilis strain ZW]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995