Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   MIS45_RS02465 Genome accession   NZ_CP092361
Coordinates   486592..490029 (+) Length   1145 a.a.
NCBI ID   WP_249450887.1    Uniprot ID   -
Organism   Wielerella bovis strain CCUG 44465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481592..495029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS45_RS02445 (MIS45_02445) - 482375..482629 (-) 255 WP_249443069.1 hypothetical protein -
  MIS45_RS02450 (MIS45_02450) - 482689..483315 (-) 627 WP_249450885.1 hypothetical protein -
  MIS45_RS11315 - 483397..483522 (+) 126 WP_283397433.1 hypothetical protein -
  MIS45_RS02455 (MIS45_02455) lptF 483528..484640 (-) 1113 WP_249450886.1 LPS export ABC transporter permease LptF -
  MIS45_RS11320 - 484615..484737 (-) 123 WP_283397434.1 hypothetical protein -
  MIS45_RS02460 (MIS45_02460) - 484738..486210 (-) 1473 WP_249451322.1 S41 family peptidase -
  MIS45_RS02465 (MIS45_02465) recC 486592..490029 (+) 3438 WP_249450887.1 exodeoxyribonuclease V subunit gamma Machinery gene
  MIS45_RS02470 (MIS45_02470) - 490361..490867 (-) 507 WP_249450888.1 TlpA disulfide reductase family protein -
  MIS45_RS02475 (MIS45_02475) - 490860..491270 (-) 411 WP_249450889.1 thioesterase family protein -
  MIS45_RS02480 (MIS45_02480) - 491272..491469 (-) 198 WP_249450890.1 hypothetical protein -
  MIS45_RS02485 (MIS45_02485) - 491484..491843 (-) 360 WP_249450891.1 VacJ -
  MIS45_RS02490 (MIS45_02490) - 491868..492650 (-) 783 WP_249450892.1 VacJ family lipoprotein -
  MIS45_RS02495 (MIS45_02495) - 492635..492910 (-) 276 WP_249450893.1 STAS domain-containing protein -
  MIS45_RS02500 (MIS45_02500) - 492910..493530 (-) 621 WP_249443080.1 ABC transporter substrate-binding protein -
  MIS45_RS02505 (MIS45_02505) mlaD 493618..494097 (-) 480 WP_249450894.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MIS45_RS02510 (MIS45_02510) mlaE 494152..494925 (-) 774 WP_249451323.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 1145 a.a.        Molecular weight: 129502.25 Da        Isoelectric Point: 5.7529

>NTDB_id=656768 MIS45_RS02465 WP_249450887.1 486592..490029(+) (recC) [Wielerella bovis strain CCUG 44465]
MLYLYQSNRLENLAQMLATLHTSVPIANPFAPEHIIVQSQGMRRFISQYLAQHTGIAANLQFALPAGLAWRLMRQAVPNI
PELSPFASEVMRWRLLDLFQSPEFATPNFQAAYTVLHDYWQNGAYAQYQLAGQLADIFDQYLVYRPDWIEAWAAGKSVPH
LAHENDAIWQAQLWRYLDNAQQNVPHRVQLWRTLMDKLADEQHAAQLPERYFVFGIATLAPMYLKLLEQIALHRDVHIFA
LNPSDLYWGNVLEPAQILRLGDAADLSIQGHPLLASLGKQGRDFFNELSEVSAQHEITSFAEKPVSGCLLHSIQHHIQTQ
TLPENAYANGWLAAHHDYLAQHVFPKNPDLAARFQAAVAEKMQPENPIAQLNADHSLQIHAAHSPLRELQILKDRLLDLL
HRHPDWQAHDIAVLTPNIEPYAPYIEAVFGKHSGSTALPYSISDVKLSRRQPLLDALEQILALMDSRFEADKLLALLDNQ
LILDTFQISREDLPLLHDTASRLNIRWGSDAAERAEYGDESGNLFTWQQGLQRLILGFMLPENRNHSLWQNIASYVSHPD
HLGALSRFATLVQHLSRTKTEWQRATTIADWCNRVRQLIATLITPNSDDDRAALQQLENALANWQNEADTAHFVREIPRE
IALQHITRFLNSQSEAGFLHGGITFCSMVPMRSLPFQAVCLLGMNDGDMPRNTKAAPFDLIARHPQKGDRSRRDDDRYLF
LEAILSARSVLYLSYVGKDIRTDEERAPSTLLGELLDTVAELSNVSPSELQQNWVKHHPLQAFSRQYFSGSLKNDLISAR
QDYADALNHPLPPFAPFVAQPENLFSSLKTDDLTTISQADFLRFWRNPVRVWLHSQLNWQAPYTQSAHEADEPFMPDQPR
QIADAYIAARKNGDDFAQVAQILSAQSLLPTGELGELVKHDYAAQAAALPSELLSSPKQPEQAGELHTVSGCLSYRLAHL
YAHGQIVYATQLLNERTDRDKLSAADKVDLLLQHLIYCAATPDDAPHSRDTHYISLPECFRLPEIPQQLALDSLAMWLAA
YHVGQNTPLPFFPRVNLAAASEFFTAEQPDWDKAIAVAAKKYHGGFRGFAQKDYPEVQLVFERGNVDDEPPYQSPQFEYL
TQNLFAVFSGCLKALVNQEDEENAA

Nucleotide


Download         Length: 3438 bp        

>NTDB_id=656768 MIS45_RS02465 WP_249450887.1 486592..490029(+) (recC) [Wielerella bovis strain CCUG 44465]
ATGCTCTATCTCTATCAATCCAATCGCCTAGAAAATCTCGCGCAAATGCTGGCAACTTTGCACACCAGCGTCCCCATCGC
CAACCCTTTTGCACCCGAACACATTATCGTGCAAAGTCAAGGTATGCGCCGTTTTATCAGCCAATATCTCGCGCAACACA
CAGGCATCGCCGCCAATTTACAGTTTGCCTTGCCCGCAGGATTGGCGTGGCGATTGATGCGTCAAGCCGTACCCAATATT
CCCGAACTCAGCCCTTTTGCATCGGAAGTGATGCGCTGGCGATTATTGGATTTGTTTCAATCGCCCGAATTTGCCACGCC
TAATTTTCAGGCTGCCTACACCGTTTTGCACGATTATTGGCAAAACGGCGCATATGCACAATATCAATTAGCAGGACAAC
TGGCGGATATTTTTGACCAATATCTCGTGTATCGCCCCGACTGGATTGAAGCGTGGGCAGCAGGCAAATCCGTTCCCCAT
TTAGCGCACGAAAACGATGCCATTTGGCAAGCACAACTGTGGCGATATTTGGATAATGCACAGCAAAACGTACCGCATCG
CGTGCAACTGTGGCGCACCTTAATGGATAAACTCGCCGATGAACAACACGCCGCCCAATTGCCCGAACGCTATTTTGTGT
TTGGCATCGCCACGCTTGCACCCATGTATTTGAAATTATTAGAACAAATCGCATTGCATCGTGATGTGCATATTTTCGCG
CTCAATCCCAGCGATTTGTATTGGGGCAATGTGCTGGAACCCGCGCAAATTCTGCGTTTGGGCGATGCTGCCGATTTGTC
TATTCAAGGACATCCTTTGCTCGCATCGCTGGGCAAACAAGGGCGCGATTTTTTCAACGAATTAAGCGAAGTCAGCGCAC
AACACGAAATCACATCATTTGCCGAAAAACCCGTTTCAGGCTGCCTATTACACAGCATTCAACATCATATTCAAACCCAA
ACGCTGCCTGAAAATGCCTACGCAAACGGTTGGTTAGCCGCGCATCACGATTATTTGGCGCAACACGTTTTCCCCAAAAA
TCCCGATTTAGCCGCCCGTTTTCAGGCTGCCGTAGCCGAAAAAATGCAGCCTGAAAACCCAATCGCACAATTAAACGCCG
ACCACAGTTTACAAATTCACGCCGCACACAGTCCCTTGCGTGAATTGCAAATTTTAAAAGACCGTTTGCTGGATTTGCTG
CATCGCCACCCCGATTGGCAAGCACACGACATTGCCGTACTCACGCCCAATATTGAGCCATACGCACCGTATATTGAAGC
CGTATTTGGCAAACATTCAGGCAGCACGGCTCTACCATACAGCATTTCAGACGTGAAACTATCGCGCCGCCAGCCACTTT
TAGACGCGCTGGAACAAATATTAGCGTTGATGGACAGCCGTTTTGAAGCCGACAAATTACTCGCGTTATTGGATAATCAA
CTGATTTTAGACACATTCCAAATCAGCCGCGAAGATTTGCCGCTGTTACACGATACCGCCAGCCGACTGAATATCCGTTG
GGGCAGCGATGCCGCCGAACGCGCCGAATATGGCGATGAATCGGGCAATTTGTTTACATGGCAGCAAGGTTTACAACGCC
TGATTTTGGGCTTTATGCTGCCTGAAAACCGCAACCATTCCTTGTGGCAAAACATCGCCAGCTATGTTTCCCACCCCGAC
CATTTGGGCGCATTGAGCCGTTTCGCCACGCTGGTGCAACACTTGTCGCGCACCAAAACCGAATGGCAACGCGCCACCAC
CATTGCCGATTGGTGCAACCGTGTCCGCCAACTCATCGCCACGCTTATCACACCCAACAGCGATGACGACCGCGCCGCCT
TACAACAATTAGAAAACGCGCTCGCCAACTGGCAAAACGAAGCCGATACCGCCCATTTTGTGCGCGAAATCCCACGCGAA
ATCGCGCTGCAACATATCACGCGCTTTTTGAACAGCCAAAGCGAAGCAGGATTTTTGCACGGCGGTATCACATTTTGCAG
CATGGTACCGATGCGCTCGCTGCCGTTTCAGGCTGTGTGTTTGCTGGGCATGAACGATGGCGATATGCCGCGCAACACCA
AAGCCGCGCCGTTTGATTTGATTGCGCGACATCCGCAAAAAGGCGACCGTTCGCGCCGTGATGATGACCGATATTTGTTT
TTGGAAGCAATTTTGTCGGCACGCAGCGTGTTGTATTTGTCGTATGTCGGCAAAGATATTCGCACCGATGAAGAACGTGC
GCCGTCCACCTTATTGGGCGAATTACTGGACACGGTGGCAGAATTAAGTAATGTATCGCCCAGCGAATTGCAGCAAAACT
GGGTCAAACATCATCCTTTGCAAGCATTTTCGCGCCAATATTTTTCAGGCAGCCTGAAAAACGATTTAATCAGTGCACGA
CAAGATTATGCCGATGCCTTGAACCATCCTTTGCCACCATTTGCGCCATTTGTAGCGCAGCCTGAAAACCTATTCAGCAG
CCTGAAAACCGATGATTTAACCACGATTTCCCAAGCCGATTTTCTGCGTTTTTGGCGCAATCCCGTGCGCGTGTGGCTGC
ATAGCCAACTTAATTGGCAAGCACCTTATACCCAATCCGCCCACGAAGCAGACGAGCCATTTATGCCCGACCAACCCCGT
CAAATCGCCGATGCTTACATTGCTGCACGCAAAAATGGCGATGATTTTGCCCAAGTCGCGCAAATCTTGTCGGCACAAAG
TTTGCTGCCCACAGGCGAATTGGGCGAATTGGTCAAACACGATTATGCCGCGCAAGCTGCCGCGCTGCCGAGTGAATTAT
TATCCAGCCCCAAACAACCTGAACAAGCTGGCGAATTGCACACCGTTTCAGGCTGCCTATCGTATCGTTTGGCGCATTTA
TACGCACACGGACAAATTGTGTACGCCACGCAATTGCTCAACGAACGAACTGACCGCGACAAATTATCCGCCGCCGACAA
AGTGGATTTGCTGTTGCAACATTTGATTTATTGCGCCGCCACGCCCGATGATGCGCCACACAGCCGCGACACGCATTACA
TCAGTTTGCCCGAATGTTTCAGGCTGCCTGAAATCCCGCAACAATTAGCATTGGACAGTTTGGCGATGTGGTTGGCGGCG
TATCATGTCGGACAAAATACGCCCTTGCCATTTTTTCCGCGTGTGAATTTGGCGGCGGCAAGCGAATTTTTCACAGCAGA
ACAGCCCGATTGGGACAAAGCCATCGCGGTGGCAGCAAAAAAATACCACGGCGGTTTTCGCGGTTTCGCGCAGAAGGATT
ATCCCGAAGTGCAGTTGGTGTTTGAACGCGGCAATGTGGACGATGAGCCGCCGTATCAATCGCCGCAGTTTGAATATTTG
ACGCAAAATTTGTTTGCCGTGTTTTCAGGCTGCTTGAAAGCGTTGGTTAATCAAGAAGATGAAGAAAATGCAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-318)

RecC C-terminal domain (RecC_C)

(834-1062)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

49.025

98.515

0.483