Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MIS31_RS05685 Genome accession   NZ_CP092360
Coordinates   1096245..1097627 (+) Length   460 a.a.
NCBI ID   WP_249447013.1    Uniprot ID   -
Organism   Wielerella bovis strain 07LB258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091245..1102627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS31_RS05660 (MIS31_05660) - 1091289..1091924 (+) 636 WP_249447570.1 alpha/beta fold hydrolase -
  MIS31_RS05665 (MIS31_05665) hflX 1091977..1093113 (-) 1137 WP_249447571.1 GTPase HflX -
  MIS31_RS05670 (MIS31_05670) - 1093352..1093627 (+) 276 WP_249442029.1 hypothetical protein -
  MIS31_RS05675 (MIS31_05675) - 1093763..1094983 (-) 1221 WP_249442028.1 sugar MFS transporter -
  MIS31_RS05680 (MIS31_05680) - 1095457..1096071 (+) 615 WP_249442027.1 hypothetical protein -
  MIS31_RS05685 (MIS31_05685) radA 1096245..1097627 (+) 1383 WP_249447013.1 DNA repair protein RadA Machinery gene
  MIS31_RS05690 (MIS31_05690) - 1097685..1097831 (-) 147 WP_249447572.1 hypothetical protein -
  MIS31_RS05695 (MIS31_05695) truA 1098085..1098870 (-) 786 WP_249442025.1 tRNA pseudouridine(38-40) synthase TruA -
  MIS31_RS05700 (MIS31_05700) - 1098877..1099326 (-) 450 WP_249442024.1 DMP19 family protein -
  MIS31_RS05705 (MIS31_05705) - 1099396..1100373 (-) 978 WP_249447573.1 glycosyltransferase family A protein -
  MIS31_RS05710 (MIS31_05710) - 1100321..1101187 (-) 867 WP_249447700.1 lysophospholipid acyltransferase family protein -
  MIS31_RS05715 (MIS31_05715) pyrF 1101249..1101992 (-) 744 WP_249447574.1 orotidine-5'-phosphate decarboxylase -
  MIS31_RS05720 (MIS31_05720) pth 1102028..1102600 (-) 573 WP_249447575.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49516.18 Da        Isoelectric Point: 6.6883

>NTDB_id=656749 MIS31_RS05685 WP_249447013.1 1096245..1097627(+) (radA) [Wielerella bovis strain 07LB258]
MAKAPKTVYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQALSQVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKTRNVLYISGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAIQAA
LKQHAPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANMPRNENEFPKLKIYGVESLQEAVMLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656749 MIS31_RS05685 WP_249447013.1 1096245..1097627(+) (radA) [Wielerella bovis strain 07LB258]
ATGGCAAAAGCCCCCAAAACCGTCTATCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGGTCGGCAAATGCCCCCA
TTGTGGCGAATGGAACACGCTACAAGAAAACATCGCGGCCCCCGAACCCAAAAACGCCCGTTTCCAATCATGGGCAGCCG
AAACGACACAAGTCCAAGCCCTATCCCAAGTTACCGCCATGGAAGTGCCACGCGAAGCCACAGGCATGGGCGAATTAGAC
CGCGTTTTGGGTGGCGGTTTGGTGGACGGAGCGGTAATTTTATTGGGTGGCGACCCTGGCATTGGCAAATCCACCTTATT
GTTACAAACCATTGCTTTAATGGCGAAAACGCGCAATGTTTTGTACATTTCAGGCGAAGAATCTGCGCAACAAGTCGCCC
TACGCGCCCAACGTTTGGGCTTGAATGCGGAAGGCGTGAATTTGCTTGCCGAAATCCGTTTGGAAGCCATTCAGGCAGCC
TTAAAGCAACACGCGCCCAGCGTGGTCGTGATTGACTCCATTCAAACTATGTATTCCGACCAAATCACGTCTGCCCCAGG
TTCCGTGTCGCAAGTGCGCGAATGTGCCGCCCAACTCACGCGCATCGCCAAACAAATGGGCATCGCCATGATTTTTGTCG
GACACGTTACCAAAGACGGTGCGATTGCGGGCCCGCGCGTGTTGGAACACATGGTAGACACCGTGTTGTATTTTGAAGGC
GACCAGCATTCCAATCATCGCATGATACGCGCGATTAAAAACCGCTTTGGCGCGGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAACGGGTTTGAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTATCGGGACGATGTGGCGGGTTCGT
GCGTGTTGGTAACGCAGGAAGGGACGCGCCCATTATTAGTGGAAATTCAATCGCTTGTAGATGACGCACACGGTTTCACG
CCTAAACGCTTAACAGTCGGTTTGGAGCAAAACCGTTTGGCGATGTTGCTGGCGGTGCTGAACCGTCATGCGGGCATTGC
CTGTTTTGACCAAGACGTGTTTTTGAACGCGGTGGGCGGCGTGAAAATTGGCGAACCTGCGGCGGATTTGGCGGCGGTGT
TGGCGATGGTGTCCAGTTTCAGAAACAAGCCGCTGCCTGAAAAAATGGTGGCGTTTGGCGAAATCGGTTTGAGTGGCGAA
ATCCGCCCCGTGCCGCGCGGTCAGGAGCGTTTGAAAGAGGCGGAAAAATTGGGTTTCAAACGCGCCATTGTGCCGAAAGC
GAATATGCCGCGCAATGAAAACGAGTTCCCCAAATTAAAAATTTATGGCGTGGAAAGTTTGCAAGAAGCGGTTATGTTGT
GTCGGGATTTAGTTGATGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

99.13

0.507
  radA Streptococcus pneumoniae Rx1

48.009

98.261

0.472
  radA Streptococcus pneumoniae D39

48.009

98.261

0.472
  radA Streptococcus pneumoniae R6

48.009

98.261

0.472
  radA Streptococcus pneumoniae TIGR4

48.009

98.261

0.472
  radA Streptococcus mitis SK321

47.692

98.913

0.472
  radA Streptococcus mitis NCTC 12261

47.473

98.913

0.47