Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MIS33_RS07450 Genome accession   NZ_CP092359
Coordinates   1506317..1507699 (-) Length   460 a.a.
NCBI ID   WP_249447013.1    Uniprot ID   -
Organism   Wielerella bovis strain 08LB461     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501317..1512699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS33_RS07415 (MIS33_07415) pth 1501352..1501924 (+) 573 WP_249447575.1 aminoacyl-tRNA hydrolase -
  MIS33_RS07420 (MIS33_07420) pyrF 1501960..1502703 (+) 744 WP_249451411.1 orotidine-5'-phosphate decarboxylase -
  MIS33_RS07425 (MIS33_07425) - 1502765..1503631 (+) 867 WP_249447700.1 lysophospholipid acyltransferase family protein -
  MIS33_RS07430 (MIS33_07430) - 1503721..1504548 (+) 828 WP_346767023.1 glycosyltransferase family A protein -
  MIS33_RS07435 (MIS33_07435) - 1504618..1505067 (+) 450 WP_249442024.1 DMP19 family protein -
  MIS33_RS07440 (MIS33_07440) truA 1505074..1505859 (+) 786 WP_249442025.1 tRNA pseudouridine(38-40) synthase TruA -
  MIS33_RS07445 (MIS33_07445) - 1506113..1506259 (+) 147 WP_249447572.1 hypothetical protein -
  MIS33_RS07450 (MIS33_07450) radA 1506317..1507699 (-) 1383 WP_249447013.1 DNA repair protein RadA Machinery gene
  MIS33_RS07455 (MIS33_07455) - 1507873..1508487 (-) 615 WP_249442027.1 hypothetical protein -
  MIS33_RS07460 (MIS33_07460) - 1508961..1510181 (+) 1221 WP_249442028.1 sugar MFS transporter -
  MIS33_RS07465 (MIS33_07465) - 1510317..1510592 (-) 276 WP_249442029.1 hypothetical protein -
  MIS33_RS07470 (MIS33_07470) hflX 1510831..1511967 (+) 1137 WP_249447571.1 GTPase HflX -
  MIS33_RS07475 (MIS33_07475) - 1512020..1512655 (-) 636 WP_249447570.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49516.18 Da        Isoelectric Point: 6.6883

>NTDB_id=656724 MIS33_RS07450 WP_249447013.1 1506317..1507699(-) (radA) [Wielerella bovis strain 08LB461]
MAKAPKTVYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQALSQVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKTRNVLYISGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAIQAA
LKQHAPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANMPRNENEFPKLKIYGVESLQEAVMLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656724 MIS33_RS07450 WP_249447013.1 1506317..1507699(-) (radA) [Wielerella bovis strain 08LB461]
ATGGCAAAAGCCCCCAAAACCGTCTATCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGGTCGGCAAATGCCCCCA
TTGTGGCGAATGGAACACGCTACAAGAAAACATCGCGGCCCCCGAACCCAAAAACGCCCGTTTCCAATCATGGGCAGCCG
AAACGACACAAGTCCAAGCCCTATCCCAAGTTACCGCCATGGAAGTGCCACGCGAAGCCACAGGCATGGGCGAATTAGAC
CGCGTTTTGGGTGGCGGTTTGGTGGACGGAGCGGTAATTTTATTGGGTGGCGACCCTGGCATTGGCAAATCCACCTTATT
GTTACAAACCATTGCTTTAATGGCGAAAACGCGCAATGTTTTGTACATTTCAGGCGAAGAATCTGCGCAACAAGTCGCCC
TACGCGCCCAACGTTTGGGCTTGAATGCGGAAGGCGTGAATTTGCTTGCCGAAATCCGTTTGGAAGCCATTCAGGCAGCC
TTAAAGCAACACGCGCCCAGCGTGGTCGTGATTGACTCCATTCAAACTATGTATTCCGACCAAATCACGTCTGCCCCAGG
TTCCGTGTCGCAAGTGCGCGAATGTGCCGCCCAACTCACGCGCATCGCCAAACAAATGGGCATCGCCATGATTTTTGTCG
GACACGTTACCAAAGACGGTGCGATTGCGGGCCCGCGCGTGTTGGAACACATGGTAGACACCGTGTTGTATTTTGAAGGC
GACCAGCATTCCAATCATCGCATGATACGCGCGATTAAAAACCGCTTTGGCGCGGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAACGGGTTTGAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTATCGGGACGATGTGGCGGGTTCGT
GCGTGTTGGTAACGCAGGAAGGGACGCGCCCATTATTAGTGGAAATTCAATCGCTTGTAGATGACGCACACGGTTTCACG
CCTAAACGCTTAACAGTCGGTTTGGAGCAAAACCGTTTGGCGATGTTGCTGGCGGTGCTGAACCGTCATGCGGGCATTGC
CTGTTTTGACCAAGACGTGTTTTTGAACGCGGTGGGCGGCGTGAAAATTGGCGAACCTGCGGCGGATTTGGCGGCGGTGT
TGGCGATGGTGTCCAGTTTCAGAAACAAGCCGCTGCCTGAAAAAATGGTGGCGTTTGGCGAAATCGGTTTGAGTGGCGAA
ATCCGCCCCGTGCCGCGCGGTCAGGAGCGTTTGAAAGAGGCGGAAAAATTGGGTTTCAAACGCGCCATTGTGCCGAAAGC
GAATATGCCGCGCAATGAAAACGAGTTCCCCAAATTAAAAATTTATGGCGTGGAAAGTTTGCAAGAAGCGGTTATGTTGT
GTCGGGATTTAGTTGATGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.096

99.13

0.507
  radA Streptococcus pneumoniae Rx1

48.009

98.261

0.472
  radA Streptococcus pneumoniae D39

48.009

98.261

0.472
  radA Streptococcus pneumoniae R6

48.009

98.261

0.472
  radA Streptococcus pneumoniae TIGR4

48.009

98.261

0.472
  radA Streptococcus mitis SK321

47.692

98.913

0.472
  radA Streptococcus mitis NCTC 12261

47.473

98.913

0.47