Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   MIS33_RS02380 Genome accession   NZ_CP092359
Coordinates   458466..461903 (+) Length   1145 a.a.
NCBI ID   WP_249447178.1    Uniprot ID   -
Organism   Wielerella bovis strain 08LB461     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 453466..466903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS33_RS02350 (MIS33_02350) - 453533..453787 (-) 255 WP_249443069.1 hypothetical protein -
  MIS33_RS02355 (MIS33_02355) - 453847..454473 (-) 627 WP_249447174.1 hypothetical protein -
  MIS33_RS02360 (MIS33_02360) - 454545..455027 (-) 483 WP_249447175.1 transposase -
  MIS33_RS02365 (MIS33_02365) - 455045..455308 (-) 264 WP_249441736.1 transposase -
  MIS33_RS02370 (MIS33_02370) lptF 455498..456610 (-) 1113 WP_249447176.1 LPS export ABC transporter permease LptF -
  MIS33_RS11685 - 456585..456707 (-) 123 WP_283397276.1 hypothetical protein -
  MIS33_RS02375 (MIS33_02375) - 456708..458183 (-) 1476 WP_249447177.1 S41 family peptidase -
  MIS33_RS02380 (MIS33_02380) recC 458466..461903 (+) 3438 WP_249447178.1 exodeoxyribonuclease V subunit gamma Machinery gene
  MIS33_RS02385 (MIS33_02385) - 461971..462477 (-) 507 WP_249447179.1 TlpA disulfide reductase family protein -
  MIS33_RS02390 (MIS33_02390) - 462470..462880 (-) 411 WP_249447180.1 thioesterase family protein -
  MIS33_RS02395 (MIS33_02395) - 463095..463454 (-) 360 WP_249444480.1 VacJ -
  MIS33_RS02400 (MIS33_02400) - 463479..464261 (-) 783 WP_249447181.1 VacJ family lipoprotein -
  MIS33_RS02405 (MIS33_02405) - 464246..464521 (-) 276 WP_249444482.1 STAS domain-containing protein -
  MIS33_RS02410 (MIS33_02410) - 464521..465141 (-) 621 WP_249443080.1 ABC transporter substrate-binding protein -
  MIS33_RS02415 (MIS33_02415) mlaD 465229..465708 (-) 480 WP_249447182.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MIS33_RS02420 (MIS33_02420) mlaE 465763..466536 (-) 774 WP_249447680.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  MIS33_RS02425 (MIS33_02425) - 466542..466679 (+) 138 WP_249444486.1 hypothetical protein -

Sequence

Protein


Download         Length: 1145 a.a.        Molecular weight: 129471.28 Da        Isoelectric Point: 5.7149

>NTDB_id=656715 MIS33_RS02380 WP_249447178.1 458466..461903(+) (recC) [Wielerella bovis strain 08LB461]
MLYLYQSNRLENLAQMLATLHTSAPIANPFAPEHIIVQSQGMRRFISQYLAQHTGIAANLHFALPAGLAWRLMREAVPNI
PELSPFSSEVMRWRLLDLFQSPEFATPDFQAAYTVLHDYWQNGAYAQYQLAGQLADIFDQYLVYRPDWIEAWAAGKSVPH
LAHENDAIWQAQLWRYLDNAQQNVPHRVQLWRTLMDKLADAQHAAQLPERYFVFGIATLAPMYLKLLEQIALHRDVHIFA
LNPSDLYWGNVLEPAQILRLGDAADLSIQGHPLLASLGKQGRDFFNELSEVSAQHEITSFAENPVSGCLLHSIQHHIQTQ
TLPENAYANGWLAAHHDYLAQHVFPKNPDLAARFQAAVAEKMQPENPIAQLNADHSLQIHAAHSPLRELQILKDRLLDLL
HRHPDWQPHDIAVLTPNIEPYAPYIEAVFGKHSGSPALPYSISDVKLSRRQPLLDALEQILALMDSRFEADKLLALLDNQ
LILDTFQISREDLPLLHDTASRLNIRWGSDAAERAEYGDVSSNLFTWQQGLQRLILGFMLPENRNHSLWQNIASYVSHPD
HLSVLSRFATLVQHLSRTKIEWQRATTIADWCNRVRQLIAALITPNSDDDRAALQQLENALANWQNEADTADFVREIPRE
IALQHITRFLNSQSEAGFLRGGITFCSMVPMRSLPFQAVCLLGMNDGDMPRNTKAAPFDLIARHPQKGDRSRRDDDRYLF
LEAILSARSVLYLSYVGKDIRTDEERAPSTLLGELLDTVAELSNVSPSALQQNWVKHHPLQAFSRQYFSGSLKNDLISAR
QDYADALNHPLPPFAPFVAQPENLFSSLKTDDLTTISQADFLRFWRNPVRVWLHSQLNWQAPYTQSAHEVDEPFMPDQPR
QIADAYIAARKNGDDFAQVAQILSAQSLLPTGELGELVKHDYAAQAAALPSELLSSPKQPEQAGELHTVSGSLSYRLAHL
YAHGQIAYATQLLNERTDRDKLSAADKVDLLLQHLIYCAATPDDAPHSRDTHYISLPECFRLPEIPQQLALDNLAMWLAA
YHVGQNTPLPFFPRVNLAAASEFFTAEQPDWDKAIAVAAKKYYGGFRGFAQKDYPEVQLVFERGNMDDEPPYQSPQFEYL
TQNLFAVFSGCLKALANKEDEENAA

Nucleotide


Download         Length: 3438 bp        

>NTDB_id=656715 MIS33_RS02380 WP_249447178.1 458466..461903(+) (recC) [Wielerella bovis strain 08LB461]
ATGCTCTATCTCTATCAATCCAATCGCCTAGAAAATCTCGCACAAATGCTGGCAACCTTGCACACCAGCGCACCCATCGC
CAACCCTTTCGCGCCCGAACACATCATTGTGCAAAGTCAAGGCATGCGCCGTTTTATCAGCCAATATCTCGCACAACACA
CGGGCATTGCCGCAAATTTACATTTTGCCCTGCCCGCAGGATTGGCGTGGCGATTGATGCGTGAAGCCGTGCCCAATATT
CCCGAACTCAGCCCGTTTTCATCGGAAGTGATGCGCTGGCGATTATTGGATTTGTTTCAATCGCCCGAATTTGCCACGCC
CGATTTTCAGGCTGCCTACACCGTTTTGCACGATTATTGGCAAAACGGCGCATATGCACAATATCAATTAGCAGGACAAC
TGGCGGATATTTTTGACCAATATCTCGTGTATCGCCCCGACTGGATTGAAGCGTGGGCAGCAGGCAAATCCGTTCCCCAT
TTGGCGCACGAAAACGATGCCATTTGGCAAGCACAACTGTGGCGATATTTGGATAATGCACAGCAAAACGTACCGCATCG
CGTGCAACTGTGGCGCACGCTGATGGACAAACTCGCCGATGCACAACACGCCGCCCAATTGCCCGAACGCTATTTTGTGT
TTGGTATCGCCACGCTTGCACCCATGTATTTGAAATTATTAGAACAAATCGCATTGCATCGTGATGTGCATATTTTCGCG
CTCAATCCCAGCGATTTGTATTGGGGCAATGTGCTGGAACCCGCGCAAATTCTGCGTTTGGGCGATGCTGCCGATTTGTC
TATTCAAGGACACCCTTTGCTCGCCTCGCTGGGCAAACAAGGGCGCGATTTTTTCAACGAATTAAGCGAAGTCAGCGCGC
AACACGAAATCACATCATTTGCCGAAAATCCCGTTTCAGGCTGCCTATTGCACAGCATTCAACATCATATTCAAACCCAA
ACGCTGCCTGAAAATGCCTACGCAAACGGTTGGTTAGCCGCGCATCACGATTATTTGGCGCAACACGTTTTCCCCAAAAA
TCCTGATTTAGCTGCTCGTTTTCAGGCTGCTGTAGCCGAAAAAATGCAGCCTGAAAACCCAATCGCACAATTAAACGCCG
ACCACAGTTTACAAATTCACGCCGCACACAGTCCTTTGCGCGAATTGCAAATTTTGAAAGACCGTTTGCTGGATTTGCTG
CATCGCCACCCCGATTGGCAACCGCACGACATCGCCGTTCTCACACCCAATATTGAGCCATACGCACCGTATATTGAAGC
CGTATTTGGCAAACATTCAGGCAGCCCTGCCCTGCCATACAGCATTTCAGACGTGAAACTATCGCGCCGCCAGCCACTTT
TAGACGCGCTGGAACAAATATTAGCGTTGATGGACAGCCGTTTTGAAGCCGACAAATTACTCGCGTTATTGGATAATCAA
CTGATTTTAGACACATTCCAAATCAGCCGCGAAGATTTGCCGCTGTTACACGATACCGCCAGCCGACTGAATATCCGTTG
GGGCAGCGATGCCGCCGAACGCGCCGAATATGGCGATGTGTCGAGCAATTTGTTTACATGGCAACAAGGTTTACAACGCC
TGATTTTGGGCTTTATGCTGCCTGAAAACCGCAACCATTCCTTGTGGCAAAACATCGCCAGCTATGTTTCCCACCCCGAC
CATTTGAGCGTATTGAGCCGTTTTGCCACGCTGGTGCAACACTTGTCGCGCACCAAAATCGAATGGCAACGCGCCACCAC
CATTGCCGATTGGTGCAACCGTGTCCGCCAACTCATCGCCGCGCTCATCACGCCCAATAGCGATGACGACCGCGCCGCCT
TACAACAATTAGAAAACGCGCTCGCTAACTGGCAAAACGAAGCCGATACCGCCGATTTTGTGCGCGAAATCCCACGCGAA
ATCGCGCTGCAACACATCACACGCTTTTTGAACAGTCAAAGCGAAGCAGGATTTTTGCGCGGCGGCATCACATTTTGCAG
CATGGTACCGATGCGCTCGCTGCCGTTTCAGGCTGTGTGTTTACTGGGCATGAACGATGGCGATATGCCGCGCAACACCA
AAGCTGCGCCATTTGATTTGATTGCGCGACATCCGCAAAAAGGCGACCGCTCGCGCCGTGATGATGACCGATATTTGTTT
TTGGAAGCGATTTTGTCGGCACGCAGTGTGTTGTATTTGTCCTATGTCGGCAAAGATATTCGCACCGATGAAGAACGTGC
GCCGTCCACATTATTGGGCGAATTACTGGACACGGTGGCAGAATTAAGCAACGTATCGCCAAGTGCATTACAGCAAAACT
GGGTCAAACATCATCCTTTACAAGCATTTTCGCGCCAATATTTTTCAGGCAGCCTGAAAAACGATTTAATCAGTGCGCGA
CAAGATTATGCCGATGCCTTGAACCATCCTTTGCCACCATTTGCGCCATTTGTAGCGCAGCCTGAAAACCTATTCAGCAG
CCTGAAAACTGATGATTTAACCACGATTTCCCAAGCTGATTTTCTGCGTTTTTGGCGCAATCCTGTGCGCGTGTGGCTGC
ATAGCCAACTCAACTGGCAAGCACCTTATACCCAATCTGCCCACGAAGTAGACGAGCCATTTATGCCCGACCAACCCCGT
CAAATCGCCGATGCTTATATTGCTGCACGCAAAAATGGCGATGATTTTGCCCAAGTCGCGCAAATCTTGTCGGCACAAAG
TTTGCTGCCCACAGGCGAATTGGGCGAATTGGTCAAACACGATTATGCCGCGCAAGCCGCCGCGCTGCCGAGTGAATTAT
TATCCAGCCCCAAACAACCTGAACAAGCTGGCGAATTGCACACCGTTTCAGGCAGCCTATCGTATCGTTTGGCGCATTTA
TACGCACATGGACAAATTGCGTACGCCACGCAATTGCTCAACGAACGAACCGACCGCGACAAGTTATCCGCCGCCGACAA
AGTGGATTTGCTGTTGCAACATTTGATTTATTGCGCCGCCACGCCCGATGATGCGCCACACAGCCGCGACACGCATTACA
TCAGTTTGCCCGAATGTTTCAGGCTACCTGAAATCCCACAACAATTAGCATTGGACAATTTGGCGATGTGGCTGGCGGCG
TATCATGTCGGACAAAACACGCCACTACCGTTTTTTCCGCGTGTGAATTTGGCAGCAGCAAGCGAATTTTTCACGGCAGA
ACAGCCCGATTGGGACAAAGCCATCGCGGTGGCAGCGAAAAAATACTACGGCGGTTTTCGTGGTTTCGCGCAGAAGGATT
ATCCCGAAGTACAGTTGGTGTTTGAGCGCGGCAATATGGACGATGAACCACCATATCAATCGCCACAGTTTGAATATTTG
ACGCAGAATTTGTTTGCCGTGTTTTCAGGCTGCCTGAAAGCGTTGGCAAATAAAGAAGATGAAGAAAATGCAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-318)

RecC C-terminal domain (RecC_C)

(834-1062)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

49.202

98.515

0.485