Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MIS46_RS08605 Genome accession   NZ_CP092358
Coordinates   1732960..1733511 (+) Length   183 a.a.
NCBI ID   WP_249442193.1    Uniprot ID   -
Organism   Wielerella bovis strain 09LB414     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1727960..1738511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS46_RS08590 (MIS46_08590) aqpZ 1729437..1730129 (+) 693 WP_249442190.1 aquaporin Z -
  MIS46_RS08595 (MIS46_08595) rfaQ 1730297..1731361 (-) 1065 WP_249442191.1 putative lipopolysaccharide heptosyltransferase III -
  MIS46_RS08600 (MIS46_08600) - 1731570..1732958 (+) 1389 WP_249442192.1 MFS transporter -
  MIS46_RS08605 (MIS46_08605) ssb 1732960..1733511 (+) 552 WP_249442193.1 single-stranded DNA-binding protein Machinery gene
  MIS46_RS08610 (MIS46_08610) - 1733886..1734665 (+) 780 WP_249442194.1 M48 family metallopeptidase -
  MIS46_RS08615 (MIS46_08615) - 1734641..1734835 (-) 195 WP_249442195.1 hypothetical protein -
  MIS46_RS08620 (MIS46_08620) prfA 1734950..1736026 (+) 1077 WP_249442196.1 peptide chain release factor 1 -
  MIS46_RS08625 (MIS46_08625) - 1736146..1736598 (+) 453 WP_249442197.1 hypothetical protein -
  MIS46_RS08630 (MIS46_08630) - 1736710..1736943 (+) 234 WP_249442198.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  MIS46_RS08635 (MIS46_08635) - 1736937..1737347 (+) 411 WP_249442199.1 type II toxin-antitoxin system VapC family toxin -
  MIS46_RS08640 (MIS46_08640) - 1737424..1737585 (+) 162 WP_249442200.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20795.91 Da        Isoelectric Point: 5.0178

>NTDB_id=656702 MIS46_RS08605 WP_249442193.1 1732960..1733511(+) (ssb) [Wielerella bovis strain 09LB414]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNSGQRQERTEWHNITLYRRQAEVAGQYLRKGSQVYLEGR
IQSRKYIDKQGMERTAYDIICNEMKMLDTRNNQQGGYQQNAYDDGGYDGAYPQAAPQQSYQAAPPQSYPQQAAYNNEPPA
APQQRRPAAPVAPVDDIDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=656702 MIS46_RS08605 WP_249442193.1 1732960..1733511(+) (ssb) [Wielerella bovis strain 09LB414]
ATGTCTTTGAATAAAGTGATTTTAATTGGTCGTTTGGGGCGCGACCCAGAAGTGCGTTATATGCCCAATGGCGAAGCGGT
GTGCAATTTTTCGGTTGCGACCAGTGAAACGTGGAACGACCGCAATTCTGGACAACGCCAAGAGCGCACGGAATGGCACA
ATATCACGCTGTATCGCCGTCAAGCCGAAGTGGCAGGGCAATATTTGCGTAAGGGTAGTCAAGTGTATTTGGAAGGACGG
ATTCAATCGCGCAAATACATAGACAAGCAGGGTATGGAGCGCACGGCTTATGATATTATTTGCAATGAAATGAAGATGTT
GGATACCAGAAATAATCAACAAGGCGGCTATCAACAAAATGCGTATGATGATGGCGGTTACGATGGTGCTTATCCGCAAG
CGGCACCACAACAATCGTATCAAGCTGCACCCCCACAAAGTTATCCACAACAAGCTGCGTACAATAACGAACCGCCTGCT
GCACCGCAACAACGCCGTCCTGCTGCACCTGTAGCACCTGTTGATGATATTGATGATGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

69.189

100

0.699
  ssb Neisseria meningitidis MC58

67.027

100

0.678
  ssb Glaesserella parasuis strain SC1401

48.108

100

0.486
  ssb Vibrio cholerae strain A1552

45.263

100

0.47