Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG361_RS29425 Genome accession   NZ_CP108224
Coordinates   6546188..6546976 (-) Length   262 a.a.
NCBI ID   WP_024754934.1    Uniprot ID   A0A4Y3RGR3
Organism   Streptomyces sp. NBC_00090     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6541188..6551976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS29410 (OG361_29395) - 6541487..6542185 (+) 699 WP_405858254.1 GNAT family N-acetyltransferase -
  OG361_RS29415 (OG361_29400) - 6542252..6544072 (+) 1821 WP_405858256.1 IucA/IucC family protein -
  OG361_RS29420 (OG361_29405) - 6544123..6546096 (+) 1974 WP_405858258.1 ATP-dependent DNA helicase -
  OG361_RS29425 (OG361_29410) dinR/lexA 6546188..6546976 (-) 789 WP_024754934.1 transcriptional repressor LexA Regulator
  OG361_RS29430 (OG361_29415) nrdR 6547427..6547936 (+) 510 WP_384567653.1 transcriptional regulator NrdR -
  OG361_RS29435 (OG361_29420) - 6548110..6551004 (+) 2895 WP_405858260.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28322.09 Da        Isoelectric Point: 6.9854

>NTDB_id=656702 OG361_RS29425 WP_024754934.1 6546188..6546976(-) (dinR/lexA) [Streptomyces sp. NBC_00090]
MTTTADSATITAQDRSQGRLEPVHAMNDAAMNGEEPGRPARALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEES
VEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAA
YQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 789 bp        

>NTDB_id=656702 OG361_RS29425 WP_024754934.1 6546188..6546976(-) (dinR/lexA) [Streptomyces sp. NBC_00090]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCACGCCATGAA
TGACGCAGCCATGAACGGCGAGGAGCCCGGGCGACCCGCCCGCGCTCTTCCCGGACGACCTCCAGGCATCAGGGCCGACA
GTTCCGGCCTCACCGACCGGCAGCGCAGGGTGATCGAGGTCATCCGCGACTCGGTCCAGCGGCGCGGATACCCGCCGTCG
ATGCGCGAGATCGGCCAGGCCGTCGGGCTCTCCAGCACGTCGTCGGTGGCTCACCAGCTCATGGCCCTGGAGCGCAAGGG
CTTCCTCCGGCGCGACCCTCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCCAGCACGCAGCCGACGGACA
CCACGGGCAAGCCCGCCGCGTCGTACGTCCCTCTGGTCGGCCGGATCGCGGCCGGCGGCCCCATCCTGGCCGAGGAGTCC
GTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTCTTCGTCCTGAAGGTCGTCGGCGACTCGAT
GATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCG
CCATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTCCTCCCGCACAACGCGGCG
TACCAGCCCATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTGGCGGTGCTCCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(144-256)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3RGR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374