Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG361_RS28420 Genome accession   NZ_CP108224
Coordinates   6311310..6312536 (+) Length   408 a.a.
NCBI ID   WP_405857963.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6306310..6317536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG361_RS28405 (OG361_28390) - 6307201..6308634 (+) 1434 WP_405857957.1 sugar porter family MFS transporter -
  OG361_RS28410 (OG361_28395) - 6308683..6309708 (-) 1026 WP_405857959.1 LLM class flavin-dependent oxidoreductase -
  OG361_RS28415 (OG361_28400) - 6309767..6311224 (-) 1458 WP_405857961.1 cytosine permease -
  OG361_RS28420 (OG361_28405) pilA 6311310..6312536 (+) 1227 WP_405857963.1 signal recognition particle-docking protein FtsY Machinery gene
  OG361_RS28425 (OG361_28410) - 6312629..6313282 (-) 654 WP_405857965.1 bifunctional DNA primase/polymerase -
  OG361_RS28430 (OG361_28415) - 6313710..6315185 (+) 1476 WP_405862483.1 hypothetical protein -
  OG361_RS28435 (OG361_28420) - 6315681..6317027 (+) 1347 WP_405857966.1 ammonium transporter -
  OG361_RS28440 (OG361_28425) - 6317024..6317362 (+) 339 WP_015036464.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 42962.10 Da        Isoelectric Point: 4.4309

>NTDB_id=656696 OG361_RS28420 WP_405857963.1 6311310..6312536(+) (pilA) [Streptomyces sp. NBC_00090]
MELILAVVIALVVAVAVTSGLVISGRKKKQLPPAEPPSTTPTITAPPAEPHVGEEAETPREEPRRTVEEVELPTGEEAAE
TPAAVEDPVVAAPPAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLTADVGVAPTQEL
VERLRERVRVLGTRTPEELRALLREELITLLGPDFDRTVHTESPADVPGVVMVVGVNGTGKTTTTGKLARVLVADGKSVV
LGAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVE
KHGPLDEILLVLDATTGQNGLIQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPGA
FVDALIGD

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=656696 OG361_RS28420 WP_405857963.1 6311310..6312536(+) (pilA) [Streptomyces sp. NBC_00090]
ATGGAACTCATCCTTGCTGTAGTCATCGCTCTGGTCGTCGCGGTCGCCGTGACGAGCGGGCTCGTGATCAGCGGCCGCAA
GAAGAAGCAGCTGCCGCCGGCCGAGCCGCCGTCCACCACGCCGACCATCACCGCTCCGCCCGCCGAACCGCACGTCGGCG
AGGAGGCGGAGACGCCGCGGGAGGAACCACGCCGCACGGTCGAGGAGGTCGAACTCCCGACGGGCGAGGAGGCCGCCGAG
ACGCCGGCCGCCGTCGAGGACCCCGTCGTCGCGGCGCCCCCGGCTCCCGAGATCGAGGTGCCCGAGCCGACCGCCGGTCG
TCTCGTACGGCTCCGCGCCCGGCTCGCCCGCTCCCAGAACTCGCTCGGCAAGGGGCTCCTGACGCTCCTCTCGCGCGAGC
ACCTCGACGAGGACACCTGGGAGGAGATCGAGGAGACCCTTCTCACCGCCGACGTCGGCGTCGCCCCCACACAGGAGCTC
GTCGAGCGGCTGCGCGAGCGGGTCAGGGTGCTCGGCACCCGCACCCCGGAGGAGCTGCGCGCCCTGCTCCGCGAGGAGCT
CATCACGCTCCTCGGCCCCGATTTCGACCGCACGGTGCACACCGAGAGCCCCGCCGACGTGCCGGGCGTGGTCATGGTCG
TCGGCGTCAACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTCCTGGTCGCCGACGGCAAGTCCGTCGTC
CTCGGCGCCGCCGACACCTTCCGGGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGT
GCGCGGACCGGAGGGCGGCGACCCGGCGTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTCG
TCCTCATCGACACCGCGGGCCGCCTCCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAG
AAGCACGGCCCGCTCGACGAGATCCTTCTCGTCCTCGACGCCACCACCGGCCAGAACGGCCTGATCCAGGCCCGCGTCTT
CGCCGAGGTCGTCGACATCACCGGCATCGTCCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCC
AGCGCGAGCTGGGCGTCCCGGTCAAGCTGATCGGCCTCGGTGAGGGCCCGGACGACCTGGCCCCCTTCGAGCCGGGCGCC
TTCGTCGACGCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(122-187)

SRP54-type protein, GTPase domain (SRP54)

(209-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.38

87.01

0.377