Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MIS44_RS08075 Genome accession   NZ_CP092357
Coordinates   1596465..1597847 (-) Length   460 a.a.
NCBI ID   WP_249448176.1    Uniprot ID   -
Organism   Wielerella bovis strain 10LB456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591465..1602847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIS44_RS08045 (MIS44_08045) pyrF 1591854..1592597 (+) 744 WP_249448173.1 orotidine-5'-phosphate decarboxylase -
  MIS44_RS08050 (MIS44_08050) - 1592967..1593833 (+) 867 WP_249449614.1 lysophospholipid acyltransferase family protein -
  MIS44_RS08055 (MIS44_08055) - 1593922..1594692 (+) 771 WP_283397333.1 glycosyltransferase -
  MIS44_RS08060 (MIS44_08060) - 1594762..1595211 (+) 450 WP_249448174.1 DMP19 family protein -
  MIS44_RS08065 (MIS44_08065) truA 1595222..1596007 (+) 786 WP_249449616.1 tRNA pseudouridine(38-40) synthase TruA -
  MIS44_RS08070 (MIS44_08070) - 1596261..1596407 (+) 147 WP_249448175.1 hypothetical protein -
  MIS44_RS08075 (MIS44_08075) radA 1596465..1597847 (-) 1383 WP_249448176.1 DNA repair protein RadA Machinery gene
  MIS44_RS08080 (MIS44_08080) - 1598052..1598375 (-) 324 WP_249448177.1 hypothetical protein -
  MIS44_RS08085 (MIS44_08085) - 1598428..1598607 (-) 180 WP_249448178.1 hypothetical protein -
  MIS44_RS08090 (MIS44_08090) - 1599142..1600359 (+) 1218 WP_249448179.1 sugar MFS transporter -
  MIS44_RS08095 (MIS44_08095) - 1600553..1600828 (-) 276 WP_249448180.1 hypothetical protein -
  MIS44_RS08100 (MIS44_08100) hflX 1600946..1602082 (+) 1137 WP_249448181.1 GTPase HflX -
  MIS44_RS08105 (MIS44_08105) - 1602135..1602770 (-) 636 WP_249448182.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49372.03 Da        Isoelectric Point: 6.9928

>NTDB_id=656678 MIS44_RS08075 WP_249448176.1 1596465..1597847(-) (radA) [Wielerella bovis strain 10LB456]
MAKAPKTVYQCTECGGTSPKWVGKCPHCGEWNTLQENIAAPEPKNARFQSWAAETTQVQALSQVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALIAKTRNVLYISGEESAQQVALRAQRLGLNAEGVNLLAEIRLEAIQAA
LKQHAPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGTRPLLVEIQSLVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIGEPAADLAAVLAMVSSFRNKPLPEKMVAFGEIGLSGE
IRPVPRGQGRLKEAEKLGFKHAIVPKANMPRHANEFPKLKIYGVESLQEAVMLCRDLVDE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=656678 MIS44_RS08075 WP_249448176.1 1596465..1597847(-) (radA) [Wielerella bovis strain 10LB456]
ATGGCAAAAGCCCCCAAAACCGTCTATCAATGCACCGAATGCGGTGGCACATCGCCCAAATGGGTTGGCAAATGCCCCCA
TTGCGGCGAATGGAACACGCTACAAGAAAACATCGCCGCCCCAGAACCGAAAAATGCCCGTTTCCAATCATGGGCAGCCG
AAACCACACAAGTCCAAGCCCTATCCCAAGTTACCGCCATGGAAGTACCACGCGAAGCCACAGGCATGGGCGAATTAGAC
CGCGTTTTGGGTGGCGGTTTGGTGGACGGAGCGGTAATTTTATTGGGTGGTGACCCTGGCATTGGTAAATCCACCCTACT
TTTGCAAACCATTGCTTTAATAGCGAAAACGCGCAATGTACTGTACATTTCAGGCGAAGAATCCGCCCAACAAGTCGCCC
TACGCGCCCAGCGTTTGGGTTTGAACGCGGAAGGCGTGAATTTACTTGCCGAAATCCGTTTGGAAGCCATTCAGGCAGCC
TTAAAACAACACGCGCCCAGCGTGGTTGTGATTGACTCCATTCAAACTATGTATTCCGACCAAATCACGTCCGCCCCAGG
CTCCGTGTCGCAAGTGCGCGAATGTGCCGCCCAACTCACGCGCATCGCCAAACAAATGGGCATTGCCATGATTTTTGTCG
GACACGTTACCAAAGACGGCGCGATTGCGGGCCCGCGCGTGTTGGAACACATGGTGGATACCGTGTTGTATTTTGAAGGC
GACCAGCATTCCAATCATCGCATGATACGCGCGATTAAAAACCGCTTTGGCGCGGCAAACGAATTGGGCGTGTTTGCGAT
GACGGAAACGGGCTTAAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTATCGGGACGATGTGGCGGGTTCGT
GCGTGTTGGTAACGCAGGAAGGAACGCGCCCATTATTGGTGGAAATTCAATCTCTTGTAGATGACGCACACGGTTTCACG
CCCAAACGCTTAACGGTCGGTTTGGAGCAAAACCGTTTGGCGATGTTGCTGGCGGTGCTGAACCGTCATGCGGGCATTGC
CTGTTTTGACCAAGACGTGTTTTTGAACGCTGTGGGTGGCGTGAAAATTGGCGAACCTGCGGCGGATTTGGCGGCGGTGT
TGGCGATGGTGTCCAGTTTCAGAAACAAGCCGCTGCCTGAAAAAATGGTGGCGTTTGGCGAAATCGGTTTGAGTGGTGAA
ATCCGCCCCGTGCCGCGCGGTCAGGGGCGTTTGAAAGAAGCGGAAAAATTGGGTTTCAAACACGCCATTGTGCCGAAAGC
GAATATGCCGCGCCATGCCAACGAGTTCCCCAAATTAAAAATTTATGGCGTGGAAAGTTTGCAAGAAGCGGTTATGTTGT
GTCGGGATTTGGTTGATGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.877

99.13

0.504
  radA Streptococcus pneumoniae Rx1

48.009

98.261

0.472
  radA Streptococcus pneumoniae D39

48.009

98.261

0.472
  radA Streptococcus pneumoniae TIGR4

48.009

98.261

0.472
  radA Streptococcus pneumoniae R6

48.009

98.261

0.472
  radA Streptococcus mitis NCTC 12261

47.788

98.261

0.47
  radA Streptococcus mitis SK321

47.672

98.043

0.467