Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG904_RS20970 Genome accession   NZ_CP108221
Coordinates   4773061..4774794 (-) Length   577 a.a.
NCBI ID   WP_405493169.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4768061..4779794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS20950 (OG904_20940) - 4768437..4769426 (-) 990 WP_405493159.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG904_RS20955 (OG904_20945) - 4769423..4769782 (-) 360 WP_405493161.1 hypothetical protein -
  OG904_RS20960 (OG904_20950) - 4769868..4771070 (+) 1203 WP_405493163.1 RNA polymerase sigma factor -
  OG904_RS20965 (OG904_20955) rcrQ 4771139..4773064 (-) 1926 WP_405493166.1 ABC transporter ATP-binding protein Regulator
  OG904_RS20970 (OG904_20960) rcrP 4773061..4774794 (-) 1734 WP_405493169.1 ABC transporter ATP-binding protein Regulator
  OG904_RS20975 (OG904_20965) - 4774982..4776448 (-) 1467 WP_405493172.1 FGGY family carbohydrate kinase -
  OG904_RS20980 (OG904_20970) - 4776589..4776897 (-) 309 WP_405493174.1 YtxH domain-containing protein -
  OG904_RS21000 (OG904_20990) - 4778292..4779095 (-) 804 WP_405493176.1 SigB/SigF/SigG family RNA polymerase sigma factor -
  OG904_RS21005 (OG904_20995) - 4779281..4779691 (-) 411 WP_405493178.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62601.68 Da        Isoelectric Point: 5.9768

>NTDB_id=656616 OG904_RS20970 WP_405493169.1 4773061..4774794(-) (rcrP) [Streptomyces sp. NBC_00096]
MLIRLMRTHLGPYRKPIALLVLLQLLQTSASLYLPTLNADIIDHGVVNGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAAAFGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPVLGLSVGAIVLRTRPLFRAMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKERFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTDSSVVP
PADPVRKLLRHGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLDPDLLARTVGMVPQKPYLFSGTVATNLRYGRPDATDEELWHALEVAQAKGFVSELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=656616 OG904_RS20970 WP_405493169.1 4773061..4774794(-) (rcrP) [Streptomyces sp. NBC_00096]
GTGCTCATACGACTCATGCGGACCCATCTGGGTCCGTACCGGAAACCGATCGCCCTGCTGGTGCTGCTGCAGCTGCTCCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTGAACGCCGACATCATCGACCACGGTGTCGTCAACGGTGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCACTGGTGCAGCTCGTCTGCAACGCCGGTGCCGTCTACTACGGCGCC
CGTACCGCCGCGGCCTTCGGCCGTGATGTCCGGGCCGCCGTCTTCGACCGCGTCCAGAGCTTCTCGGCGCGTGAGCTCGG
CCACTTCGGCGCCCCATCGTTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTCGTACTGATGACCTTCA
CCCTGATGGTCTCGGCTCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTGGACGTGAAGCTGTCGGGCGTG
CTGCTCGCCGTCGTTCCCGTCCTCGGCCTGTCGGTCGGCGCGATCGTGCTGCGGACGCGGCCGCTGTTCCGTGCGATGCA
GACGCGGCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGACCTCACCGGTGTCTCGCTGGCGGCCGGAAAGCTGCTCGCCCTG
ATGTTCCCGACCGTCATAGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGGATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGACTCAAGCGTGGTCCCG
CCCGCCGATCCGGTCCGCAAGCTGCTCCGCCACGGCCGCCTGGAACTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCCGTACTGCGCGGGGTCGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCGACCGGCGGCGACGTGCTCGTAGACGGCGAGGACGTCCGC
CGCCTGGACCCGGACCTGCTCGCCAGGACCGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCCAC
CAACCTGCGCTACGGGCGCCCCGACGCCACCGACGAAGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCTCCGAGCTGGAGGGCGGGCTCGACGCCCCCATCGCCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTACAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCTCCGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGGATCATCGTCCTCGACGAGGGGCAGGTGGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.102

100

0.407