Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG904_RS20965 Genome accession   NZ_CP108221
Coordinates   4771139..4773064 (-) Length   641 a.a.
NCBI ID   WP_405493166.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4766139..4778064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS20945 (OG904_20935) - 4766221..4768440 (+) 2220 WP_405493157.1 molybdopterin oxidoreductase family protein -
  OG904_RS20950 (OG904_20940) - 4768437..4769426 (-) 990 WP_405493159.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG904_RS20955 (OG904_20945) - 4769423..4769782 (-) 360 WP_405493161.1 hypothetical protein -
  OG904_RS20960 (OG904_20950) - 4769868..4771070 (+) 1203 WP_405493163.1 RNA polymerase sigma factor -
  OG904_RS20965 (OG904_20955) rcrQ 4771139..4773064 (-) 1926 WP_405493166.1 ABC transporter ATP-binding protein Regulator
  OG904_RS20970 (OG904_20960) rcrP 4773061..4774794 (-) 1734 WP_405493169.1 ABC transporter ATP-binding protein Regulator
  OG904_RS20975 (OG904_20965) - 4774982..4776448 (-) 1467 WP_405493172.1 FGGY family carbohydrate kinase -
  OG904_RS20980 (OG904_20970) - 4776589..4776897 (-) 309 WP_405493174.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68847.46 Da        Isoelectric Point: 6.4371

>NTDB_id=656615 OG904_RS20965 WP_405493166.1 4771139..4773064(-) (rcrQ) [Streptomyces sp. NBC_00096]
MSGPGGRMMMGPPTTRSMDFKGSGKRLLRELARDRAKLWGMVIAVVGSVAASVTGPKILGKATDLVFAGIVGRQMPAGIT
KEQALEGLRAKGQGGMADMLSGTAFTPGKGIDFGAVGAVALWALGVFTLAGLLMLVATRLSNHIMNGTVYRMREDLQAKL
SRLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTIPVSGFVATKIGKK
SQPQFVAQWKSTGALNAHVEEMYSGHTLVKVFGRQKESAELFAEQNEALYRASFKAQLVSGVMQPVMLFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAEVPERPEALRGQVTFDK
VAFRYEPDKPLIENLSLTVHPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTW
LFGGTIAENIAYGASREVTRAEVEEAARAAHADRFIRTLPEGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADLILVMESGSIVEQGTHEELLRSGGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=656615 OG904_RS20965 WP_405493166.1 4771139..4773064(-) (rcrQ) [Streptomyces sp. NBC_00096]
ATGAGCGGTCCCGGAGGACGGATGATGATGGGACCGCCGACGACGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCT
GCTGCGCGAGCTGGCGCGCGACCGGGCCAAGCTGTGGGGCATGGTCATCGCGGTCGTCGGCAGCGTCGCCGCGTCGGTGA
CCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTCGTGTTCGCGGGGATCGTCGGCCGCCAGATGCCGGCGGGGATCACC
AAGGAGCAGGCCCTGGAGGGGCTGCGCGCCAAGGGCCAGGGCGGGATGGCGGACATGCTGTCCGGGACCGCCTTCACCCC
GGGCAAGGGCATCGACTTCGGTGCGGTCGGGGCGGTGGCGCTGTGGGCGCTGGGCGTGTTCACGCTCGCCGGTCTGCTGA
TGCTGGTCGCGACGAGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGACCTGCAGGCCAAGCTC
TCGCGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACGAACGACATCGACAACAT
CGGTCAGACGCTCCAGCAGACGATGGGCCAGCTGCTCAACTCCCTCCTGACGATCGTCGGCGTGCTGGCGATGATGTTCT
GGATCTCTCCGCTGCTGGCTCTGGTCGCGCTGGTCACCATCCCGGTCTCGGGATTCGTGGCCACGAAGATCGGCAAGAAG
TCGCAGCCGCAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCCCTGAACGCGCACGTCGAGGAGATGTACTCGGGCCACAC
GCTGGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGAGCTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCTTCGT
TCAAGGCGCAGCTGGTCAGCGGTGTCATGCAGCCGGTGATGCTGTTCATCTCGAACATCAACTACGTGCTCGTCGCGGTC
GTCGGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTACGAGCTGC
TGGACGCGGCGGAGCAGGAGCCGGACGCCGAGGTCCCGGAGCGTCCGGAGGCGCTGCGCGGGCAGGTCACCTTCGACAAG
GTCGCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGACGGTCCACCCCGGTCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCGGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCG
CCCTCGACGGCGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGGCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCTTCGCGCGAGGTGACGCGCGCCGAGGTCGAGGAGGCCGC
GCGGGCGGCGCACGCCGACCGGTTCATCCGCACCCTGCCCGAGGGCTACGACACGGTGCTCGACGACGAGGGTGCGGGCG
TCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTCCTCGACGAGGCC
ACGAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGTCCTTCGT
GATCGCGCACCGGCTGTCCACGATCCGCGACGCCGACCTGATCCTGGTGATGGAGAGCGGTTCCATCGTGGAGCAGGGCA
CGCACGAGGAGCTGCTGCGCTCGGGCGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTC
GACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(53-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.186

97.348

0.401