Detailed information NTG0656605

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG904_RS17330
• Genome accession: NZ_CP108221
• Coordinates: 3930054..3931031 (+)
• Length: 325 a.a.
• NCBI ID: WP_405491902.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00096
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3925054..3936031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG904_RS17300 (OG904_17290)	-	3925364..3926032 (+)	669	WP_405498078.1	TetR/AcrR family transcriptional regulator	-
OG904_RS17305 (OG904_17295)	-	3926128..3927663 (+)	1536	WP_405491892.1	MFS transporter	-
OG904_RS17310 (OG904_17300)	-	3927784..3928584 (+)	801	WP_405491894.1	dioxygenase	-
OG904_RS17315 (OG904_17305)	-	3928601..3929062 (+)	462	WP_405491896.1	hypothetical protein	-
OG904_RS17320 (OG904_17310)	-	3929034..3929339 (-)	306	WP_405491898.1	hypothetical protein	-
OG904_RS17325 (OG904_17315)	-	3929349..3929876 (-)	528	WP_405491900.1	GNAT family N-acetyltransferase	-
OG904_RS17330 (OG904_17320)	rpoS	3930054..3931031 (+)	978	WP_405491902.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG904_RS17335 (OG904_17325)	-	3931159..3932115 (-)	957	WP_405491904.1	helix-turn-helix transcriptional regulator	-
OG904_RS17340 (OG904_17330)	-	3932179..3933777 (+)	1599	WP_405491906.1	MFS transporter	-
OG904_RS17345 (OG904_17335)	-	3933954..3934715 (+)	762	WP_405491908.1	DeoR/GlpR family DNA-binding transcription regulator	-
OG904_RS17350 (OG904_17340)	pfkB	3934712..3935665 (+)	954	WP_405491910.1	1-phosphofructokinase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36490.29 Da
• Isoelectric Point: 5.2545

>NTDB_id=656605 OG904_RS17330 WP_405491902.1 3930054..3931031(+) (rpoS) [Streptomyces sp. NBC_00096]
MATRAVARRQSTSSARAAGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERKGKKPSQEELE
VLAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMGVDEDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAAA

Nucleotide

• Length: 978 bp

>NTDB_id=656605 OG904_RS17330 WP_405491902.1 3930054..3931031(+) (rpoS) [Streptomyces sp. NBC_00096]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCTGCGGGCGGGGAGATCGCAGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCACGCACTCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGCAAGGGCAAGAAGCCCTCCCAGGAGGAGCTCGAG
GTCCTGGCCGCCGAGGGTGAGCGCGCGAAGGAAGTCTTCATCCGCTCCAACCTCCGGCTGGTGGTCGCCGTCGCCCGCCG
CTATCCGCGCAGCGGCCTGCCCCTCCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGGTGCGCGCGGTCGAGAAGTTCG
ACTACGCGAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGTTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGGGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGTGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACCACGGAGAAGCGGGTCGGTGACGTGCTGGACT
GGGCGCGCGACCCGGTCAGCTTGAACATGGGCGTGGACGAGGACGGCGACACGCAGTTCGGCGACCTCCTCGAGGACACC
TCCGCGATCTCCCCGGAGCAGTCGGTCCTGTCGCTCCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTGGACCA
GCGGACGGCGTCGATCATCAAGATGCGTTACGGCATCGAGGACGGCCGGGAGCGTACCCTGACAGAGGTGGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCGCTCCTCGAACTGAAGCGGATGGCCCGGGACACGGGC
TTCGACGCAGCGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (26-59)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 region 3 (Sigma70_r3) (172-248)

• Sigma-70, region 4 (Sigma70_r4) (261-313)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.667	92.308	0.366