Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KJS94_RS10945 Genome accession   NZ_CP092334
Coordinates   2555740..2557110 (+) Length   456 a.a.
NCBI ID   WP_214448727.1    Uniprot ID   -
Organism   Flavihumibacter rivuli strain IMCC34838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550740..2562110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS94_RS10935 (KJS94_10935) - 2551014..2554211 (-) 3198 WP_214448728.1 SusC/RagA family TonB-linked outer membrane protein -
  KJS94_RS10940 (KJS94_10940) - 2554573..2555259 (-) 687 WP_239804137.1 zinc metallopeptidase -
  KJS94_RS10945 (KJS94_10945) radA 2555740..2557110 (+) 1371 WP_214448727.1 DNA repair protein RadA Machinery gene
  KJS94_RS10950 (KJS94_10950) - 2557178..2557870 (+) 693 WP_214448726.1 ComF family protein -
  KJS94_RS10955 (KJS94_10955) - 2558025..2559437 (+) 1413 WP_214448725.1 choice-of-anchor Q domain-containing protein -
  KJS94_RS10960 (KJS94_10960) - 2559539..2560009 (+) 471 WP_369806997.1 glutathione peroxidase -
  KJS94_RS10965 (KJS94_10965) - 2560145..2561359 (+) 1215 WP_214448723.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50702.26 Da        Isoelectric Point: 6.5049

>NTDB_id=656595 KJS94_RS10945 WP_214448727.1 2555740..2557110(+) (radA) [Flavihumibacter rivuli strain IMCC34838]
MSKTKTSFFCQQCGYESTKWLGKCPACQQWNTFVEEIQQKEKSRPLQPWQQDNDNGPTGVTRLTDLSSKPETRLLTPDVE
LNRVLGGGIVPGSIILVAGEPGIGKSTLFLQCGLQLQNTLTLYVSGEESEQQIKMRADRLPYKSDNFYLLTETNTQRIFQ
EVKKLKPQLVIIDSIQTLHTSHIESSPGSVSQIRECTAEWQRFAKETSTPVILIGHITKDGSIAGPKILEHMVDTVLQFE
GDRHYAFRILRTLKNRFGSTAELGIYEMTESGMRGVLNPSDILLSHNEERLSGTAIAATLEGMRPLLIEAQALVTQSVYG
TPQRTVSGFDLRRLQLLLAVLEKRGGFQFGMKDVFLNIAGGLKVEDPAIDLAILCSLLSSYDDTPIPPTIAFAGEVGLSG
EIRSVNRIEQRIAEAEKLGLEKMIISRYNQKGLAKLSSNIEIIPVAKVEDVYRILF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=656595 KJS94_RS10945 WP_214448727.1 2555740..2557110(+) (radA) [Flavihumibacter rivuli strain IMCC34838]
ATGAGTAAAACGAAAACCAGTTTTTTTTGTCAGCAATGTGGATATGAAAGCACAAAATGGTTAGGTAAATGTCCCGCATG
CCAACAATGGAATACATTCGTTGAAGAGATACAACAGAAAGAAAAATCAAGACCCCTTCAACCCTGGCAACAGGATAATG
ATAATGGTCCTACTGGTGTTACCAGGTTAACCGACCTGAGCAGCAAACCTGAAACAAGATTACTTACCCCCGATGTTGAA
TTGAACAGGGTGTTGGGTGGCGGAATTGTTCCCGGCAGCATCATATTGGTTGCCGGCGAACCAGGCATTGGCAAATCAAC
CCTGTTCCTGCAATGTGGCCTTCAACTCCAGAACACGCTCACCTTATATGTTAGTGGGGAAGAAAGTGAGCAACAGATCA
AGATGAGGGCCGACAGGCTTCCTTATAAGAGTGATAACTTTTACCTGCTCACAGAAACCAATACCCAAAGGATCTTCCAG
GAAGTAAAAAAACTGAAACCGCAGTTGGTGATCATCGACTCCATCCAGACGCTCCATACTTCCCATATTGAATCCTCACC
CGGTAGTGTTTCACAGATCAGGGAATGTACTGCAGAATGGCAACGCTTTGCAAAGGAAACCTCCACCCCAGTGATATTGA
TCGGCCATATCACCAAGGACGGCAGCATTGCGGGACCAAAGATCCTTGAACATATGGTGGATACTGTTCTGCAATTTGAG
GGTGACAGGCATTATGCGTTCCGTATACTGAGGACCTTAAAGAACAGGTTTGGCAGCACCGCAGAACTGGGCATATACGA
AATGACAGAGTCCGGCATGCGTGGTGTGTTGAACCCAAGTGATATCCTGCTCTCCCATAATGAAGAAAGGTTAAGTGGCA
CCGCTATTGCAGCCACCCTGGAAGGCATGCGGCCTTTACTCATAGAAGCACAGGCCCTGGTTACACAATCTGTTTATGGT
ACCCCGCAACGTACGGTGAGCGGGTTCGACCTCAGGCGACTCCAGTTACTACTGGCCGTATTGGAAAAACGCGGCGGTTT
CCAGTTTGGCATGAAGGATGTCTTCCTGAATATTGCTGGGGGTTTGAAGGTAGAAGACCCTGCCATTGACCTCGCCATTC
TTTGTTCGCTGCTAAGTTCCTACGATGACACCCCCATTCCTCCCACTATCGCCTTTGCCGGTGAGGTAGGACTAAGCGGT
GAGATCAGGTCGGTCAACCGCATTGAACAACGGATAGCTGAAGCTGAAAAACTTGGACTGGAAAAAATGATCATCTCGCG
CTACAACCAGAAAGGCTTGGCTAAGCTCTCCAGCAATATCGAGATCATTCCCGTTGCCAAAGTGGAAGATGTTTACCGCA
TCCTATTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.507
  radA Streptococcus pneumoniae Rx1

47.65

100

0.489
  radA Streptococcus pneumoniae D39

47.65

100

0.489
  radA Streptococcus pneumoniae R6

47.65

100

0.489
  radA Streptococcus pneumoniae TIGR4

47.65

100

0.489
  radA Streptococcus mitis NCTC 12261

47.436

100

0.487
  radA Streptococcus mitis SK321

47.436

100

0.487