Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KJS93_RS14305 Genome accession   NZ_CP092333
Coordinates   3283563..3284933 (+) Length   456 a.a.
NCBI ID   WP_214458846.1    Uniprot ID   -
Organism   Flavihumibacter fluvii strain IMCC34837     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3278563..3289933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS93_RS14295 (KJS93_14295) - 3278899..3282108 (-) 3210 WP_214458844.1 SusC/RagA family TonB-linked outer membrane protein -
  KJS93_RS14300 (KJS93_14300) - 3282460..3283143 (-) 684 WP_214458845.1 zinc metallopeptidase -
  KJS93_RS14305 (KJS93_14305) radA 3283563..3284933 (+) 1371 WP_214458846.1 DNA repair protein RadA Machinery gene
  KJS93_RS14310 (KJS93_14310) - 3284990..3285694 (+) 705 WP_239808306.1 ComF family protein -
  KJS93_RS14315 (KJS93_14315) - 3286188..3286700 (+) 513 WP_214458848.1 glutathione peroxidase -
  KJS93_RS14320 (KJS93_14320) - 3286885..3288096 (+) 1212 WP_214458849.1 hypothetical protein -
  KJS93_RS14325 (KJS93_14325) ricT 3288152..3289522 (+) 1371 WP_214458850.1 regulatory iron-sulfur-containing complex subunit RicT -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50770.74 Da        Isoelectric Point: 6.1877

>NTDB_id=656589 KJS93_RS14305 WP_214458846.1 3283563..3284933(+) (radA) [Flavihumibacter fluvii strain IMCC34837]
MSKTKSSFFCQQCGYESTKWLGKCPACQEWNSFVEEIKQPVTKQNITPWKVESGRIKTGVTRLQDIKVTEESRIVTPDIE
LNRVLGGGIVPGSIVLVAGEPGIGKSTLFLQIGLQLQKIKVLYVSGEESEQQIRMRADRLPFSNEYFFLLTETNTQIIFQ
EIRKLQPQLLIIDSIQTLHTTQIESSPGSVSQIRECAAELQRFAKESDTPVFLIGHITKDGAIAGPKILEHMVDTVLQFE
GDRHYAFRILRTLKNRFGSTAELGIYEMSAEGMKGVLNPSDLLLSQKEEQLSGTAIAATIEGMRPFLIEVQALVTPSVYG
TPQRTVSGFDLRRLQLLLAVLEKRGGFQFGSKDVFLNIAGGLKVEDPAIDLAVLCALLSSYDDIPIAQTICFAGEIGLSG
EIRSVNRIEQRIAEAEKLGFEKMIISRYNLKGLSKINPQIEIIPVARVEDVYRILF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=656589 KJS93_RS14305 WP_214458846.1 3283563..3284933(+) (radA) [Flavihumibacter fluvii strain IMCC34837]
ATGAGCAAAACTAAGTCCTCTTTTTTCTGTCAGCAATGCGGATATGAAAGTACAAAATGGTTAGGCAAATGCCCGGCTTG
CCAGGAATGGAATTCTTTCGTCGAAGAAATTAAACAACCTGTTACCAAACAAAATATAACTCCCTGGAAAGTGGAAAGCG
GGCGAATTAAAACAGGCGTAACCAGGTTACAGGATATTAAGGTGACGGAAGAATCAAGAATCGTTACACCGGATATTGAA
TTGAACAGAGTATTGGGTGGTGGAATTGTTCCTGGCAGTATCGTTTTGGTTGCAGGAGAACCCGGTATCGGAAAATCAAC
CTTGTTCCTACAGATCGGATTGCAATTGCAAAAGATCAAAGTTTTGTACGTAAGCGGTGAAGAAAGTGAACAACAAATCA
GGATGCGGGCGGATCGACTTCCTTTTTCCAATGAATATTTTTTCCTGCTTACCGAAACAAACACACAGATCATTTTTCAG
GAAATCAGGAAGCTCCAGCCCCAACTGTTGATTATCGACTCCATCCAAACCCTGCATACCACCCAGATCGAATCATCTCC
CGGAAGTGTTTCCCAAATAAGGGAATGCGCAGCTGAATTGCAACGCTTTGCCAAAGAATCTGATACGCCTGTTTTCCTGA
TCGGACATATCACCAAAGATGGTGCAATTGCAGGTCCAAAAATCCTGGAACACATGGTGGACACGGTTTTGCAGTTCGAA
GGCGATCGCCATTACGCTTTCAGAATATTACGAACACTGAAAAATCGTTTTGGCAGTACGGCAGAACTAGGCATTTATGA
AATGAGTGCAGAAGGCATGAAAGGGGTGCTTAATCCAAGTGATCTTTTATTGTCGCAAAAGGAAGAACAACTTAGTGGTA
CAGCCATTGCTGCCACCATAGAAGGCATGCGACCTTTTTTGATCGAGGTGCAGGCACTGGTTACACCATCCGTATATGGC
ACCCCGCAAAGAACAGTCAGCGGATTTGACCTGAGGAGGCTTCAATTATTATTGGCCGTGTTGGAGAAACGAGGCGGATT
TCAATTTGGGTCAAAAGATGTTTTCCTAAATATTGCGGGTGGATTAAAAGTGGAAGATCCGGCAATCGACCTTGCCGTAC
TGTGCGCTTTATTGAGTTCATATGACGATATACCCATAGCACAAACAATCTGTTTTGCCGGTGAAATCGGATTAAGCGGT
GAAATAAGATCAGTTAACCGGATCGAACAAAGAATTGCTGAAGCAGAAAAGCTTGGCTTTGAAAAAATGATCATCTCCCG
ATATAACCTGAAAGGATTATCAAAGATCAATCCACAAATAGAGATCATTCCTGTTGCCCGGGTTGAAGATGTTTATCGCA
TACTTTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

AAA domain (AAA_25)

(69-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

50.545

100

0.509
  radA Bacillus subtilis subsp. subtilis str. 168

50.655

100

0.509
  radA Streptococcus pneumoniae D39

50.328

100

0.504
  radA Streptococcus pneumoniae TIGR4

50.328

100

0.504
  radA Streptococcus mitis NCTC 12261

50.328

100

0.504
  radA Streptococcus pneumoniae R6

50.328

100

0.504
  radA Streptococcus pneumoniae Rx1

50.328

100

0.504