Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG904_RS06005 Genome accession   NZ_CP108221
Coordinates   1442775..1443566 (+) Length   263 a.a.
NCBI ID   WP_214953278.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00096     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1437775..1448566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG904_RS05995 (OG904_05995) - 1438727..1441621 (-) 2895 WP_405488129.1 vitamin B12-dependent ribonucleotide reductase -
  OG904_RS06000 (OG904_06000) nrdR 1441763..1442275 (-) 513 WP_328301176.1 transcriptional regulator NrdR -
  OG904_RS06005 (OG904_06005) dinR/lexA 1442775..1443566 (+) 792 WP_214953278.1 transcriptional repressor LexA Regulator
  OG904_RS06010 (OG904_06010) - 1443628..1445598 (-) 1971 WP_405488132.1 ATP-dependent DNA helicase -
  OG904_RS06015 (OG904_06015) - 1445651..1447378 (-) 1728 WP_405488134.1 IucA/IucC family protein -
  OG904_RS06020 (OG904_06020) - 1447678..1448352 (-) 675 WP_405488136.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28508.30 Da        Isoelectric Point: 7.3866

>NTDB_id=656575 OG904_RS06005 WP_214953278.1 1442775..1443566(+) (dinR/lexA) [Streptomyces sp. NBC_00096]
MTTTADSATITAQNRSQSRLEPVHAMNDASLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFCLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=656575 OG904_RS06005 WP_214953278.1 1442775..1443566(+) (dinR/lexA) [Streptomyces sp. NBC_00096]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAAGCCTGAACCCGGAAGCGGAACCCGTACGCCCCGCACGCTCGCTGCCAGGGCGGCCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGGCGCGGCTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCGAGCACGTCTTCGGTCGCGCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGCGACCCCCACCGCCCCCGGGCGTACGAGGTGCGCGGATCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACGGGCAAGCCCGCGGCCTCGTACGTACCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCTGCCTCAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACCGTCCGTCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCCATGCTCGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376