Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R28_RS18330 Genome accession   NZ_AP022069
Coordinates   3831366..3831971 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WP4-W18-ESBL-09     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3826366..3836971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R28_RS18310 (WP4W18E09_35540) aes 3826507..3827466 (+) 960 WP_000801805.1 acetyl esterase -
  H7R28_RS18315 (WP4W18E09_35550) hemH 3827463..3828425 (-) 963 WP_001250117.1 ferrochelatase -
  H7R28_RS18320 (WP4W18E09_35560) adk 3828557..3829201 (-) 645 WP_001220233.1 adenylate kinase -
  H7R28_RS18325 (WP4W18E09_35570) htpG 3829382..3831256 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7R28_RS18330 (WP4W18E09_35580) recR 3831366..3831971 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R28_RS18335 (WP4W18E09_35590) ybaB 3831971..3832300 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R28_RS18340 (WP4W18E09_35600) dnaX 3832353..3834284 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  H7R28_RS18345 (WP4W18E09_35610) apt 3834413..3834964 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R28_RS18350 (WP4W18E09_35620) ybaN 3835117..3835494 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R28_RS18355 (WP4W18E09_35630) priC 3835564..3836091 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  H7R28_RS18360 (WP4W18E09_35640) rsmS 3836105..3836269 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=65652 H7R28_RS18330 WP_001195025.1 3831366..3831971(-) (recR) [Escherichia coli strain WP4-W18-ESBL-09]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=65652 H7R28_RS18330 WP_001195025.1 3831366..3831971(-) (recR) [Escherichia coli strain WP4-W18-ESBL-09]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment