Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG272_RS20820 Genome accession   NZ_CP108215
Coordinates   4775519..4776517 (-) Length   332 a.a.
NCBI ID   WP_405894385.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00104     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4770519..4781517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG272_RS20805 (OG272_20840) - 4771068..4771919 (-) 852 WP_327729262.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG272_RS20810 (OG272_20845) - 4772186..4773760 (-) 1575 WP_405894381.1 MFS transporter -
  OG272_RS20815 (OG272_20850) - 4773863..4774837 (+) 975 WP_405894383.1 helix-turn-helix transcriptional regulator -
  OG272_RS20820 (OG272_20855) rpoS 4775519..4776517 (-) 999 WP_405894385.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG272_RS20825 (OG272_20860) - 4776710..4777228 (+) 519 WP_405894387.1 GNAT family N-acetyltransferase -
  OG272_RS20830 (OG272_20865) - 4777240..4777587 (-) 348 WP_326585783.1 DUF1330 domain-containing protein -
  OG272_RS20835 (OG272_20870) - 4777894..4778679 (-) 786 WP_326582143.1 class III extradiol ring-cleavage dioxygenase -
  OG272_RS20840 (OG272_20875) - 4778888..4779394 (+) 507 WP_327729258.1 MarR family transcriptional regulator -
  OG272_RS20845 (OG272_20880) - 4779740..4781290 (-) 1551 WP_326582141.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37129.81 Da        Isoelectric Point: 4.9607

>NTDB_id=656455 OG272_RS20820 WP_405894385.1 4775519..4776517(-) (rpoS) [Streptomyces sp. NBC_00104]
MATRAVAARRSSASGRADAARSVRASGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGEEAARAD
ATREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPQEIAAELGSNADRVVDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAVA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=656455 OG272_RS20820 WP_405894385.1 4775519..4776517(-) (rpoS) [Streptomyces sp. NBC_00104]
ATGGCAACCCGTGCCGTCGCCGCTCGTCGTTCGTCCGCCTCCGGCCGGGCCGACGCGGCTCGCAGCGTTCGCGCCTCTGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCGCAGCAGATCCTCGACGGCGAGGAGGCGGCCAGGGCGGAC
GCCACCCGCGAAGAGCTCGAGGCCCTCGTCGCGGACAGCGAGCGGGCCAAGGACATCTTCATCCGGTCGAACCTGCGGCT
CGTCGTGGCGGTCGCCCGGCGTTATCCGCGCAGTGGCCTGCCCCTGCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCGATAGCGGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAACTGGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGTGACCCCGAGCCCCAGGAGATCGCCGCCGAACTCGGTTCCAACGCGGACC
GCGTCGTCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGGCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGGACCC
TCACCGAGGTCGGCAAGGAGCACGGGCTCACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAG
AAGCTCGCCCGCGACACGGGCTTCGACGCCGTCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364