Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPY66_RS03380 Genome accession   NZ_CP092282
Coordinates   688008..689348 (+) Length   446 a.a.
NCBI ID   WP_337986696.1    Uniprot ID   -
Organism   Dehalobacter sp. DCM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683008..694348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY66_RS03360 (LPY66_03330) - 683277..683750 (+) 474 WP_337986692.1 CtsR family transcriptional regulator -
  LPY66_RS03365 (LPY66_03335) - 683785..684315 (+) 531 WP_337986693.1 DNA helicase UvrBC -
  LPY66_RS03370 (LPY66_03340) - 684312..685376 (+) 1065 WP_337986694.1 protein arginine kinase -
  LPY66_RS03375 (LPY66_03345) - 685465..687966 (+) 2502 WP_337986695.1 ATP-dependent Clp protease ATP-binding subunit -
  LPY66_RS03380 (LPY66_03350) radA 688008..689348 (+) 1341 WP_337986696.1 DNA repair protein RadA Machinery gene
  LPY66_RS03385 (LPY66_03355) - 689497..689889 (-) 393 WP_337986697.1 DUF1573 domain-containing protein -
  LPY66_RS03390 (LPY66_03360) - 690157..691332 (+) 1176 WP_337986698.1 PIN/TRAM domain-containing protein -
  LPY66_RS03395 ispD 691310..692506 (+) 1197 WP_337986699.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LPY66_RS03400 (LPY66_03375) gltX 692726..694186 (+) 1461 WP_337986700.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48768.04 Da        Isoelectric Point: 5.8862

>NTDB_id=656455 LPY66_RS03380 WP_337986696.1 688008..689348(+) (radA) [Dehalobacter sp. DCM]
MAGSKTKFYCRECGQESARWLGRCPGCGEWNTLIEERVEKSKPADRRGIAQAIPLSEIHTIEGQRMDTGSAELNRVFGGG
VVHGSFVLLSGEPGIGKSTLFLQMADYLSKTNDVLYVSGEESARQIKLRADRMGINSERVHILADNSLEAVRAEVLQKGY
SVIFIDSIQTMTLEDIQSAPGSVSQVREGASFLLKLAKENEITVFLAGHITKEGAIAGPRVLEHMVDTVLYFEGDQHHLF
RLLRAVKNRFGPANEIGVFEMRGNGLIDVTNPSMFFMGDNSRAQAGSGVAIIMEGTRPILVEVQALVTASVFAPPRRTVN
GMDYHRLLMLLAVLDKRAGYTFGTRDVFVNIAGGLEVDEPAADLAIIASVMSGIKEKPLGKIAFVGELGLTGEIRGVSHI
EQRIKEAEKFGFQTCLIPEINATSLGSTECRIFPVKTIEEVLDYLF

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=656455 LPY66_RS03380 WP_337986696.1 688008..689348(+) (radA) [Dehalobacter sp. DCM]
TTGGCTGGTTCAAAGACAAAGTTCTATTGCCGCGAATGTGGACAGGAGAGTGCCCGATGGTTGGGGCGATGTCCCGGATG
CGGCGAGTGGAATACATTGATCGAGGAACGCGTGGAAAAATCCAAGCCCGCTGACAGGAGAGGGATCGCACAGGCGATCC
CTCTATCTGAGATTCATACGATTGAAGGACAGCGGATGGATACCGGCAGCGCAGAATTGAACCGTGTGTTTGGTGGCGGA
GTTGTTCATGGTTCTTTCGTACTGCTCAGCGGTGAGCCGGGGATCGGAAAGTCCACGCTTTTCTTGCAGATGGCAGATTA
TTTATCCAAAACGAACGATGTCTTATATGTTTCGGGTGAAGAATCTGCCCGGCAAATCAAGTTAAGAGCAGACCGCATGG
GAATTAACTCCGAACGCGTACATATTCTTGCGGATAATTCATTGGAAGCTGTCCGTGCCGAAGTACTTCAAAAAGGCTAT
TCCGTTATTTTTATTGACTCTATCCAAACGATGACCCTCGAGGATATCCAATCGGCACCGGGAAGTGTCAGTCAGGTAAG
AGAAGGGGCATCGTTTCTTTTGAAATTAGCTAAAGAAAACGAAATCACGGTATTTCTTGCCGGGCATATAACCAAAGAGG
GTGCCATCGCGGGACCGAGGGTATTGGAGCATATGGTCGATACGGTTCTCTATTTTGAAGGAGATCAGCATCATCTTTTT
CGTTTGCTGCGTGCCGTCAAAAACCGCTTCGGTCCTGCGAATGAAATTGGTGTTTTTGAGATGAGAGGAAATGGCCTGAT
CGATGTGACCAATCCTTCGATGTTTTTTATGGGAGATAACTCACGGGCACAGGCCGGCTCCGGTGTCGCTATCATTATGG
AAGGGACACGCCCCATTTTGGTAGAAGTTCAAGCACTGGTTACAGCATCCGTATTTGCTCCTCCCCGGAGGACCGTTAAC
GGAATGGATTACCATCGCCTGCTGATGCTTTTGGCCGTGTTGGATAAACGGGCAGGGTATACGTTTGGCACCAGAGATGT
CTTTGTCAATATAGCCGGCGGATTGGAAGTCGATGAACCGGCGGCAGACCTTGCGATCATCGCCTCCGTCATGTCGGGAA
TCAAGGAAAAGCCTTTAGGCAAGATCGCTTTTGTTGGCGAATTGGGATTAACCGGTGAGATTCGGGGAGTTTCGCATATT
GAACAGCGAATTAAGGAAGCAGAAAAATTTGGTTTTCAAACGTGTCTAATCCCCGAAATCAATGCAACAAGCTTAGGCAG
TACAGAATGCCGGATTTTCCCGGTAAAGACAATTGAAGAAGTATTAGACTATCTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

AAA domain (AAA_25)

(69-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.668

96.637

0.509
  radA Streptococcus pneumoniae Rx1

49.558

100

0.502
  radA Streptococcus pneumoniae D39

49.558

100

0.502
  radA Streptococcus pneumoniae R6

49.558

100

0.502
  radA Streptococcus pneumoniae TIGR4

49.558

100

0.502
  radA Streptococcus mitis SK321

49.558

100

0.502
  radA Streptococcus mitis NCTC 12261

49.336

100

0.5