Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG454_RS31170 Genome accession   NZ_CP108213
Coordinates   6640135..6640929 (-) Length   264 a.a.
NCBI ID   WP_030709636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6635135..6645929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS31155 (OG454_31100) - 6635280..6635978 (+) 699 WP_405832269.1 GNAT family N-acetyltransferase -
  OG454_RS31160 (OG454_31105) - 6636077..6637987 (+) 1911 WP_405832271.1 IucA/IucC family protein -
  OG454_RS31165 (OG454_31110) - 6638040..6640010 (+) 1971 WP_405832272.1 ATP-dependent DNA helicase -
  OG454_RS31170 (OG454_31115) dinR/lexA 6640135..6640929 (-) 795 WP_030709636.1 transcriptional repressor LexA Regulator
  OG454_RS31175 (OG454_31120) nrdR 6641426..6641938 (+) 513 WP_401611233.1 transcriptional regulator NrdR -
  OG454_RS31180 (OG454_31125) - 6642109..6644997 (+) 2889 WP_401611235.1 vitamin B12-dependent ribonucleotide reductase -
  OG454_RS31185 (OG454_31130) - 6645098..6645493 (-) 396 WP_401611237.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28602.40 Da        Isoelectric Point: 7.4238

>NTDB_id=656408 OG454_RS31170 WP_030709636.1 6640135..6640929(-) (dinR/lexA) [Streptomyces sp. NBC_00105]
MTTTADSATITAQNRSQSRLEPVHAMNDANLNPDAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=656408 OG454_RS31170 WP_030709636.1 6640135..6640929(-) (dinR/lexA) [Streptomyces sp. NBC_00105]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGTAGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGTGACTCCGTGCAGCGTCGGGGTTACCCG
CCGTCCATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTGGCCCACCAGCTGATGGCCCTCGAGCG
GAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGCGCCTACGAGGTACGCGGCTCCGACCAGCCCAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TCGCCGCGATGCTTGACGGGGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATTCCCGGCGATGACGCGACCATCCTCGGCAAGGTCGTCGCGGTGCTGCGTCGAGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375