Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG454_RS30290 Genome accession   NZ_CP108213
Coordinates   6424401..6425618 (+) Length   405 a.a.
NCBI ID   WP_401613300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6419401..6430618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS30275 (OG454_30225) - 6420279..6421709 (+) 1431 WP_401613306.1 sugar porter family MFS transporter -
  OG454_RS30280 (OG454_30230) - 6421750..6422736 (-) 987 WP_401613304.1 LLM class flavin-dependent oxidoreductase -
  OG454_RS30285 (OG454_30235) - 6422800..6424257 (-) 1458 WP_401613302.1 cytosine permease -
  OG454_RS30290 (OG454_30240) pilA 6424401..6425618 (+) 1218 WP_401613300.1 signal recognition particle-docking protein FtsY Machinery gene
  OG454_RS30295 (OG454_30245) - 6425695..6426363 (-) 669 WP_405832139.1 bifunctional DNA primase/polymerase -
  OG454_RS30300 (OG454_30250) - 6426786..6428303 (+) 1518 WP_401613296.1 hypothetical protein -
  OG454_RS30305 (OG454_30255) - 6428596..6429939 (+) 1344 WP_405832141.1 ammonium transporter -
  OG454_RS30310 (OG454_30260) - 6429936..6430274 (+) 339 WP_030708521.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42381.46 Da        Isoelectric Point: 4.3773

>NTDB_id=656403 OG454_RS30290 WP_401613300.1 6424401..6425618(+) (pilA) [Streptomyces sp. NBC_00105]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPPAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAEAPV
EAPAAEPEAPAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVDR
LRERVKVLGTRTPADLRALLKEELLTLVGTDFDRVVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=656403 OG454_RS30290 WP_401613300.1 6424401..6425618(+) (pilA) [Streptomyces sp. NBC_00105]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCCCGGCACCGCCCAGCACGCCGACCATCACTGCCCCGCCTGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGGACTCCCGGAGGCGGAGGCCGAGGCTCCGGTC
GAGGCGCCGGCGGCCGAGCCCGAGGCTCCGGCCGCGCCCGCGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGTCCG
GCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGGGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTCATCGCCGACGTGGGCGTCGTGCCCACCCAGGAGCTCGTCGACCGG
CTCCGCGAAAGGGTCAAGGTGCTCGGCACCCGCACCCCGGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGTCGTGAAGACGGAGAGCGGCGAGGACACGCCCGGCGTGATCATGGTCGTCGGCGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGCGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCG
GCCGACACCTTCCGTGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGACCGGGTCGGCGCCCGTACCGTGCGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACGGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGT
CCGCTGGACGAGATCCTGCTGGTCCTCGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAAC
TGGGCGTCCCGGTCAAGCTCGTCGGGCTCGGCGAGGGTGCGGACGACCTGGCCCCCTTCGAGCCGGAGGCGTTCGTCGAC
GCCCTCATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)

SRP54-type protein, GTPase domain (SRP54)

(206-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.436

100

0.412