Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HP1CH_RS00225 Genome accession   NZ_AP013355
Coordinates   39445..40581 (+) Length   378 a.a.
NCBI ID   WP_001045839.1    Uniprot ID   A0AAC8MZ88
Organism   Helicobacter pylori 26695-1CH     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34445..45581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1CH_RS00190 panD 34895..35248 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  HP1CH_RS00195 - 35251..35544 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HP1CH_RS00200 - 35544..36548 (+) 1005 WP_000468475.1 PDZ domain-containing protein -
  HP1CH_RS00205 comB6 36556..37611 (+) 1056 WP_000786660.1 P-type conjugative transfer protein TrbL Machinery gene
  HP1CH_RS08835 - 37627..37741 (+) 115 Protein_33 comB7 lipoprotein -
  HP1CH_RS00215 comB8 37738..38475 (+) 738 WP_000660509.1 type IV secretion system protein Machinery gene
  HP1CH_RS00220 comB9 38475..39452 (+) 978 WP_001862530.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HP1CH_RS00225 comB10 39445..40581 (+) 1137 WP_001045839.1 DNA type IV secretion system protein ComB10 Machinery gene
  HP1CH_RS00230 - 40651..42063 (+) 1413 WP_000694809.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HP1CH_RS00235 gmd 42105..43250 (+) 1146 WP_000659810.1 GDP-mannose 4,6-dehydratase -
  HP1CH_RS00240 - 43243..44175 (+) 933 WP_001002442.1 GDP-L-fucose synthase family protein -
  HP1CH_RS09080 - 44203..44419 (-) 217 Protein_40 anthranilate synthase component I -
  HP1CH_RS08840 - 44575..44891 (-) 317 Protein_41 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42206.80 Da        Isoelectric Point: 9.9924

>NTDB_id=65639 HP1CH_RS00225 WP_001045839.1 39445..40581(+) (comB10) [Helicobacter pylori 26695-1CH]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKNPPIDLKANTNPPKKDFSSKQWDLLAARITPFKQGPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=65639 HP1CH_RS00225 WP_001045839.1 39445..40581(+) (comB10) [Helicobacter pylori 26695-1CH]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAGC
AAACACAAACCCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAG
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAATAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAGGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGTTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.296

100

0.963

Multiple sequence alignment