Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG454_RS24780 Genome accession   NZ_CP108213
Coordinates   5265422..5266834 (-) Length   470 a.a.
NCBI ID   WP_401610898.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5260422..5271834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS24755 (OG454_24710) - 5260435..5261130 (-) 696 WP_401610904.1 hypothetical protein -
  OG454_RS24760 (OG454_24715) - 5261118..5261678 (-) 561 WP_030010715.1 SigE family RNA polymerase sigma factor -
  OG454_RS24765 (OG454_24720) - 5261976..5262893 (-) 918 WP_401610902.1 A/G-specific adenine glycosylase -
  OG454_RS24770 (OG454_24725) - 5263248..5264054 (+) 807 WP_405831369.1 hypothetical protein -
  OG454_RS24775 (OG454_24730) disA 5264124..5265248 (-) 1125 WP_361769502.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG454_RS24780 (OG454_24735) radA/sms 5265422..5266834 (-) 1413 WP_401610898.1 DNA repair protein RadA Machinery gene
  OG454_RS24785 (OG454_24740) - 5267016..5268812 (+) 1797 WP_405831372.1 BACON domain-containing protein -
  OG454_RS24790 (OG454_24745) - 5268880..5269737 (-) 858 WP_401610894.1 hypothetical protein -
  OG454_RS24795 (OG454_24750) - 5269801..5270736 (+) 936 WP_401610892.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49264.42 Da        Isoelectric Point: 8.0046

>NTDB_id=656389 OG454_RS24780 WP_401610898.1 5265422..5266834(-) (radA/sms) [Streptomyces sp. NBC_00105]
MAARTARSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSTAAVPIGQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSA
VLGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVIEVADMGDALRVLPRGRSRTPARERASD

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=656389 OG454_RS24780 WP_401610898.1 5265422..5266834(-) (radA/sms) [Streptomyces sp. NBC_00105]
ATGGCTGCCCGCACTGCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGCTGGACGACCGCGAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGATGGGCGCACCCGCCGTGCGGACCACCGCCG
CCGGCCGCGTGTCGACCGCCGCGGTGCCGATCGGGCAGGTCGACGGGCGGACCGCGACCGCGCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTCCTCGGCGGCGGGCTCGTCCCCGGCGCCGTCGTCCTGCTCGCCGGCGAGCCCGGCGTCGGGAAGTC
GACGCTGCTGCTGGACGTCGCGGCGAAGGCGGCGAGCGACGAGCACCGCACCCTCTACGTCACGGGCGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCCCTCAGCGACCACCTCTACCTCGCCGCCGAGACCGATCTGTCCGCC
GTGCTCGGGCACCTCGACGCCGTGAAGCCCTCCCTGCTGATCCTGGACTCCGTACAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCA
CCCTGCTCGTCGGCCACGTGACCAAGGACGGGGCGATCGCCGGCCCCCGGCTGCTGGAACACCTCGTGGACGTGGTGCTG
AGCTTCGAGGGCGACCGGCACGCGCGGCTGCGGCTGGTGCGCGGCATCAAGAACCGGTACGGGGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGTGCCGAGGCCG
TTCCGGGCACCTGCCTGACGGTGACTCTGGAGGGGAAGCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCG
CAGATCCCCTCCCCCCGGCGCACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACGGCGCTCGGCAAGCGCGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCGCCG
ACCTGGCGATCGCGCTCGCCCTGGCCTCCGCCGCCAGTGACGTCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACCGGCGTGCAGCGGCGCCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGC
GCTGGTCCCGGCGGATCCGGGGAAGGTCCCGGCCGGGATGAAGGTGATCGAAGTGGCCGACATGGGCGACGCGCTGCGGG
TGCTGCCGCGCGGCCGCTCCCGTACTCCGGCCAGGGAGCGGGCCTCGGACTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus mitis SK321

42.637

96.809

0.413
  radA Streptococcus mitis NCTC 12261

42.637

96.809

0.413
  radA Streptococcus pneumoniae TIGR4

42.699

96.17

0.411
  radA Streptococcus pneumoniae R6

42.699

96.17

0.411
  radA Streptococcus pneumoniae Rx1

42.699

96.17

0.411
  radA Streptococcus pneumoniae D39

42.699

96.17

0.411