Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG454_RS23975 Genome accession   NZ_CP108213
Coordinates   5102084..5102683 (+) Length   199 a.a.
NCBI ID   WP_030709293.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5097084..5107683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS23950 (OG454_23905) - 5097606..5098961 (+) 1356 WP_401611076.1 aspartate aminotransferase family protein -
  OG454_RS23955 (OG454_23910) - 5099059..5099724 (+) 666 WP_401611074.1 GntR family transcriptional regulator -
  OG454_RS23960 (OG454_23915) - 5099832..5100482 (+) 651 WP_319733147.1 hypothetical protein -
  OG454_RS23965 (OG454_23920) - 5100677..5101423 (-) 747 WP_383566976.1 SLATT domain-containing protein -
  OG454_RS23970 (OG454_23925) - 5101703..5102047 (+) 345 WP_078892798.1 YbaB/EbfC family nucleoid-associated protein -
  OG454_RS23975 (OG454_23930) recR 5102084..5102683 (+) 600 WP_030709293.1 recombination mediator RecR Machinery gene
  OG454_RS23980 (OG454_23935) - 5102676..5103323 (+) 648 WP_327415353.1 DUF5063 domain-containing protein -
  OG454_RS23985 (OG454_23940) - 5103445..5104719 (+) 1275 WP_319722162.1 aspartate kinase -
  OG454_RS23990 (OG454_23945) - 5104716..5105789 (+) 1074 WP_401611072.1 aspartate-semialdehyde dehydrogenase -
  OG454_RS23995 (OG454_23950) - 5106012..5106743 (+) 732 WP_405834922.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21912.29 Da        Isoelectric Point: 5.0142

>NTDB_id=656384 OG454_RS23975 WP_030709293.1 5102084..5102683(+) (recR) [Streptomyces sp. NBC_00105]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=656384 OG454_RS23975 WP_030709293.1 5102084..5102683(+) (recR) [Streptomyces sp. NBC_00105]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGCGACCTCACGGTC
ATCTGTGTCGTCGAGGAACCGAAGGACGTCGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGCCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472