Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG454_RS19475 Genome accession   NZ_CP108213
Coordinates   4170914..4171891 (-) Length   325 a.a.
NCBI ID   WP_405830532.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4165914..4176891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS19455 (OG454_19415) pfkB 4166767..4167717 (-) 951 WP_405830527.1 1-phosphofructokinase -
  OG454_RS19460 (OG454_19420) - 4167714..4168022 (-) 309 Protein_3848 D-beta-D-heptose 1-phosphate adenosyltransferase -
  OG454_RS19465 (OG454_19425) - 4168185..4169753 (-) 1569 WP_405830529.1 MFS transporter -
  OG454_RS19470 (OG454_19430) - 4169816..4170775 (+) 960 WP_405830531.1 helix-turn-helix transcriptional regulator -
  OG454_RS19475 (OG454_19435) rpoS 4170914..4171891 (-) 978 WP_405830532.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG454_RS19480 (OG454_19440) - 4172419..4173243 (-) 825 WP_401608508.1 dioxygenase -
  OG454_RS19485 (OG454_19445) - 4173351..4174889 (-) 1539 WP_405830533.1 MFS transporter -
  OG454_RS19490 (OG454_19450) - 4174952..4175746 (-) 795 WP_405830535.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36564.33 Da        Isoelectric Point: 5.1430

>NTDB_id=656371 OG454_RS19475 WP_405830532.1 4170914..4171891(-) (rpoS) [Streptomyces sp. NBC_00105]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAEEVELSQIIEAGVYARQILDGEIDRKGKSPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEHAEIAAELDTTEKRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDKRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=656371 OG454_RS19475 WP_405830532.1 4170914..4171891(-) (rpoS) [Streptomyces sp. NBC_00105]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCGGCCGAGGAAGTGGAGCTCTCGCAGATCATCG
AGGCGGGCGTCTACGCCCGGCAGATCCTCGACGGCGAGATAGACCGCAAGGGCAAGTCCCCGGCACGCGAGGAGCTGGAG
GCGCTCGCCGCCGAAGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTGCGCCTCGTCGTGGCCGTCGCCCGGCG
CTACCCGCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAATGCCGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGCGTCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACACCACGGAGAAGCGGGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGTCGGTGGACGACGACGGCGACACGCAGTTCGGCGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACAA
GCGCACCGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAGCGGATGGCGCGCGACACGGGC
TTCGACGCCGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

92.308

0.372