Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG454_RS17525 Genome accession   NZ_CP108213
Coordinates   3728647..3729672 (-) Length   341 a.a.
NCBI ID   WP_401602187.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00105     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723647..3734672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG454_RS17495 (OG454_17460) - 3724176..3724742 (-) 567 WP_401602182.1 acetate uptake transporter -
  OG454_RS17500 (OG454_17465) - 3724841..3725374 (-) 534 WP_383567568.1 universal stress protein -
  OG454_RS17505 (OG454_17470) - 3725832..3726152 (+) 321 WP_401602184.1 hypothetical protein -
  OG454_RS17510 (OG454_17475) - 3726529..3727701 (+) 1173 WP_401602186.1 helix-turn-helix domain-containing protein -
  OG454_RS17515 (OG454_17480) orn 3727807..3728409 (+) 603 WP_327414147.1 oligoribonuclease -
  OG454_RS17525 (OG454_17490) cytR 3728647..3729672 (-) 1026 WP_401602187.1 LacI family DNA-binding transcriptional regulator Regulator
  OG454_RS17530 (OG454_17495) - 3729775..3731112 (+) 1338 WP_405830228.1 ABC transporter substrate-binding protein -
  OG454_RS17535 (OG454_17500) - 3731120..3732115 (+) 996 WP_405830229.1 carbohydrate ABC transporter permease -
  OG454_RS17540 (OG454_17505) - 3732112..3732936 (+) 825 WP_401602191.1 carbohydrate ABC transporter permease -
  OG454_RS17545 (OG454_17510) - 3732933..3734279 (+) 1347 WP_405830232.1 GH1 family beta-glucosidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36263.21 Da        Isoelectric Point: 6.6172

>NTDB_id=656366 OG454_RS17525 WP_401602187.1 3728647..3729672(-) (cytR) [Streptomyces sp. NBC_00105]
MNGHGRSGGRPTLEEVAARARVGRGTVSRVINGSPKVSEHTRAVVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSEVVRGVGAALAETDVQLVLTLAGSDRERRRLSQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPTVISGRR
SAAETLPCVDSDNLAGAAEAVRHLLARGRRTVATITGPLDVYGAQCRLDGYRQALAAAGHQVDEMLISVGDFTEDGGRRA
MRELLERRPGLDAVFAASDVMAAGAGRELRAAGRRIPQDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMAQLLLARI
AGETDEASVVLPNRLVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=656366 OG454_RS17525 WP_401602187.1 3728647..3729672(-) (cytR) [Streptomyces sp. NBC_00105]
ATGAACGGGCACGGGCGCAGCGGGGGACGGCCCACGCTGGAGGAGGTCGCGGCGCGCGCCAGGGTAGGGCGCGGCACGGT
CTCCCGGGTGATCAACGGATCCCCCAAGGTCAGCGAGCATACCCGGGCCGTCGTCGAGGCGGCCGTGGCGGAGCTGGGGT
ACGTGCCGAACCGCGCCGCGCGGGCCCTGGCCGCCAACCGCACCGACGCCATCGCCCTCGTGATTCCCGAGCCCGAGGCC
CGGTTCTTCGCCGAGCCCTACTTCTCCGAAGTGGTCCGCGGGGTCGGCGCCGCCCTCGCCGAGACCGACGTCCAGCTCGT
GCTGACCCTGGCGGGCAGCGACCGCGAGCGCCGCCGCCTCTCCCAGTACCTGTCCGGGCACCGCGTGGACGGCGTACTGC
TCGTCTCCGTCCACGCCGGGGACCCGCTGCCGGAGCTGCTGGCCGAGCTCGGCATCCCGACGGTGATCAGCGGCCGCCGC
TCCGCCGCCGAGACGCTGCCCTGCGTGGACTCCGACAATCTGGCGGGCGCGGCCGAGGCCGTACGCCACCTCCTCGCACG
GGGCCGCCGCACGGTCGCCACGATCACCGGCCCGCTGGACGTGTACGGGGCCCAGTGCCGCCTCGACGGCTACCGCCAGG
CCCTGGCCGCCGCCGGACACCAGGTCGACGAGATGCTGATCTCGGTCGGCGACTTCACCGAGGACGGCGGCCGGCGGGCC
ATGCGCGAGCTGCTGGAACGCCGCCCGGGCCTCGACGCGGTCTTCGCCGCCTCGGACGTCATGGCGGCGGGCGCCGGGCG
GGAGCTGCGCGCGGCCGGCCGCCGGATCCCCCAGGACGTGGCGCTGGTCGGCTTCGACGACTCGGTGGTGGCACGGCACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGGAGATGGGCCGCACCATGGCGCAGCTGCTGCTGGCGAGGATC
GCCGGGGAGACGGACGAGGCATCCGTCGTGCTGCCGAACCGGCTGGTGGTCCGCGAATCCTCGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(12-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.166

99.12

0.378
  cytR Vibrio parahaemolyticus RIMD 2210633

37.87

99.12

0.375