Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MF271_RS12855 Genome accession   NZ_CP092190
Coordinates   2027205..2027579 (-) Length   124 a.a.
NCBI ID   WP_239049142.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2022205..2032579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS12840 (MF271_12840) - 2022377..2024053 (+) 1677 WP_239049139.1 alpha-amylase family glycosyl hydrolase -
  MF271_RS12845 (MF271_12845) - 2024054..2024872 (-) 819 WP_239049140.1 hypothetical protein -
  MF271_RS12850 (MF271_12850) comEC 2024938..2027205 (-) 2268 WP_239049141.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MF271_RS12855 (MF271_12855) comEA 2027205..2027579 (-) 375 WP_239049142.1 helix-hairpin-helix domain-containing protein Machinery gene
  MF271_RS12860 (MF271_12860) rpsL 2027889..2028296 (+) 408 WP_189093653.1 30S ribosomal protein S12 -
  MF271_RS12865 (MF271_12865) rpsG 2028491..2028961 (+) 471 WP_189093646.1 30S ribosomal protein S7 -
  MF271_RS12870 (MF271_12870) fusA 2029117..2031210 (+) 2094 WP_239049143.1 elongation factor G -
  MF271_RS25240 - 2031407..2031637 (-) 231 Protein_2034 DUF805 domain-containing protein -
  MF271_RS12875 (MF271_12875) - 2031686..2032315 (+) 630 WP_239049144.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 12908.14 Da        Isoelectric Point: 9.8051

>NTDB_id=656300 MF271_RS12855 WP_239049142.1 2027205..2027579(-) (comEA) [Deinococcus sp. KNUC1210]
MFRDAEARWGAALTLAALLCGTWALWPTAFPAPRVPTVSHVPLPALTAPAAPVYPTTDSITPLISGKLNLNTATEAQLEA
LPKVGPALAGRIIAGRPYRSLADLDAVKGIGNSLLKTLAPLVSF

Nucleotide


Download         Length: 375 bp        

>NTDB_id=656300 MF271_RS12855 WP_239049142.1 2027205..2027579(-) (comEA) [Deinococcus sp. KNUC1210]
ATGTTCCGAGACGCTGAAGCCCGCTGGGGTGCGGCCCTCACACTGGCGGCCCTGCTCTGCGGCACATGGGCGCTGTGGCC
CACCGCGTTTCCGGCCCCGCGTGTGCCGACGGTCTCGCATGTGCCGCTGCCCGCGCTGACGGCTCCAGCGGCCCCGGTCT
ACCCCACCACAGACAGCATCACGCCGCTGATTTCCGGCAAACTGAATCTGAATACCGCCACCGAAGCACAACTCGAAGCG
CTGCCGAAGGTGGGGCCAGCGCTGGCAGGGCGCATCATCGCGGGGCGGCCCTACCGCAGTCTGGCCGATCTGGACGCGGT
GAAGGGCATCGGGAACAGCCTTCTGAAGACCCTGGCACCCCTGGTGAGCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(67-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.377

98.387

0.565