Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   MF271_RS12850 Genome accession   NZ_CP092190
Coordinates   2024938..2027205 (-) Length   755 a.a.
NCBI ID   WP_239049141.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2019938..2032205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS25235 - 2020179..2020877 (+) 699 WP_370657314.1 S8 family serine peptidase -
  MF271_RS12835 (MF271_12835) - 2021122..2022255 (+) 1134 WP_239049138.1 LCP family protein -
  MF271_RS12840 (MF271_12840) - 2022377..2024053 (+) 1677 WP_239049139.1 alpha-amylase family glycosyl hydrolase -
  MF271_RS12845 (MF271_12845) - 2024054..2024872 (-) 819 WP_239049140.1 hypothetical protein -
  MF271_RS12850 (MF271_12850) comEC 2024938..2027205 (-) 2268 WP_239049141.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MF271_RS12855 (MF271_12855) comEA 2027205..2027579 (-) 375 WP_239049142.1 helix-hairpin-helix domain-containing protein Machinery gene
  MF271_RS12860 (MF271_12860) rpsL 2027889..2028296 (+) 408 WP_189093653.1 30S ribosomal protein S12 -
  MF271_RS12865 (MF271_12865) rpsG 2028491..2028961 (+) 471 WP_189093646.1 30S ribosomal protein S7 -
  MF271_RS12870 (MF271_12870) fusA 2029117..2031210 (+) 2094 WP_239049143.1 elongation factor G -
  MF271_RS25240 - 2031407..2031637 (-) 231 Protein_2034 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 80231.26 Da        Isoelectric Point: 8.7641

>NTDB_id=656299 MF271_RS12850 WP_239049141.1 2024938..2027205(-) (comEC) [Deinococcus sp. KNUC1210]
MTGNVGRHAQPVGRVETTDSVVPVRPDIQQAAWWQRIPAAVPLVFGMIAGILLGFASGWWVLATLLALGLTAASRRWWLT
GLVLLAGGAGYVREQNWEHAPDLLAGYVGGTLTLQGHWDGQFLSLKDPAAKVALSPKPTDPPGELRVSGVLVRPAGVRIP
GGFDDAFWLRAQGVHELLAGAAVRSSVPERGIRGWFRRGLAAGLTPQQAALLTAVELGDKNAVSHETFEGSTAQEDGVQT
AFTRAGLAHLMALSGQNVALLTGLLTLLFIRTPLGRIGLARYPVMIVLLGAFLWLVGPSPSITRAVLMGAAVLAGQWSGR
GRLDVYGVLALTALVGLAAQPAWLFDVGFVLSYLAVLGLTLSSWAASRLPERWPTWIRFPLVATVLAEAATLPVVAGSFH
QVPLTGLPANLLAEGVMAALVPLGFLAGLLGPLGFVPNALNGLLLNALLWIAHTFGQAPVLSWGMIGAAGFAAYAVFAAA
LTLWLTRRVRLWALALTALLCTLGTALPARLQTPREVVYLDVGQGDSTLIRAGALRMLIDGGGTPRGDYDVGAKTVVPAL
HALGVHALEIVVATHADADHIEGLVSVLKLLPVGELWIGQRKTEDPLLAELLDVADLKHIPVREVRRGDGLQAGDISLTV
LWPRGQPWSTADNDNSVVIRLDSPRFHTAVLGDLPDPAETLLGMGQLDLLKTAHHGSRFSSTDPFLNETQPKDVVISVGR
NTYGHPNPDLLARLAARGVRVWRTDQVGTVRWPIP

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=656299 MF271_RS12850 WP_239049141.1 2024938..2027205(-) (comEC) [Deinococcus sp. KNUC1210]
ATGACCGGGAACGTCGGACGCCACGCCCAGCCCGTTGGACGGGTGGAGACCACAGATTCGGTCGTTCCGGTGCGCCCCGA
CATTCAGCAGGCCGCGTGGTGGCAGCGCATTCCCGCCGCTGTGCCCCTGGTCTTTGGCATGATTGCCGGAATTCTGCTGG
GATTCGCGTCCGGCTGGTGGGTGCTGGCGACGCTGCTGGCACTGGGCCTGACGGCAGCAAGTCGGCGCTGGTGGCTGACC
GGGCTGGTGCTGCTGGCAGGCGGTGCCGGATACGTGCGCGAGCAGAACTGGGAACACGCACCCGATCTGCTGGCAGGGTA
CGTCGGCGGCACTCTGACGCTCCAGGGCCACTGGGACGGACAGTTTCTGAGCCTGAAAGACCCGGCGGCGAAGGTGGCGC
TGTCGCCCAAACCCACCGATCCGCCGGGAGAGCTGCGCGTGTCGGGCGTGCTGGTGAGGCCAGCGGGCGTCCGCATTCCC
GGTGGCTTCGACGATGCCTTCTGGCTGCGTGCTCAGGGCGTGCATGAGCTGCTGGCGGGCGCGGCTGTCAGGAGCAGTGT
GCCGGAACGGGGCATACGCGGCTGGTTCCGCCGAGGGCTGGCAGCAGGCCTGACTCCACAGCAGGCCGCGCTGCTGACCG
CCGTGGAGCTGGGCGACAAGAACGCCGTCTCGCATGAGACCTTCGAGGGGAGCACGGCGCAGGAAGACGGCGTGCAGACC
GCCTTTACCCGCGCCGGACTCGCGCATCTGATGGCGCTGAGCGGTCAGAATGTGGCGCTGCTGACCGGCCTGCTGACGCT
GCTGTTCATCCGCACGCCGCTGGGCCGGATCGGGCTGGCCCGCTACCCGGTGATGATCGTGCTGCTGGGGGCGTTTCTGT
GGCTGGTGGGGCCGTCACCCAGCATCACGCGGGCGGTGCTGATGGGCGCGGCGGTGCTGGCAGGACAGTGGTCCGGGCGG
GGACGACTGGACGTGTACGGCGTACTGGCCCTGACCGCACTGGTGGGGCTGGCAGCGCAACCCGCGTGGCTGTTCGACGT
GGGCTTTGTCCTCAGTTATCTGGCGGTGCTGGGGCTGACCCTTTCGAGTTGGGCGGCGAGCAGGCTGCCGGAACGCTGGC
CGACGTGGATCCGATTTCCGCTGGTCGCGACCGTGCTGGCCGAGGCCGCGACCCTGCCGGTGGTGGCGGGAAGTTTTCAT
CAGGTGCCGCTGACGGGGCTGCCTGCCAATCTGCTGGCCGAGGGCGTCATGGCTGCGCTGGTGCCGCTGGGCTTTCTGGC
CGGGCTGCTGGGCCCGCTGGGATTCGTTCCCAACGCACTGAATGGTCTGCTGCTGAACGCGCTGCTGTGGATCGCCCACA
CCTTCGGACAGGCCCCGGTGCTGAGCTGGGGGATGATCGGGGCGGCAGGATTCGCGGCGTATGCGGTCTTTGCCGCCGCT
CTGACCCTGTGGCTGACCCGGCGCGTGCGGCTGTGGGCGCTGGCCCTGACCGCGCTGCTGTGCACGCTGGGCACGGCGCT
TCCGGCACGTCTTCAGACGCCGCGCGAGGTGGTGTATCTGGATGTGGGACAGGGCGACAGCACGCTGATCCGGGCCGGAG
CGCTGCGCATGCTGATCGACGGCGGCGGCACGCCACGCGGCGACTACGACGTGGGTGCAAAGACCGTGGTGCCCGCCCTG
CACGCTCTGGGCGTCCACGCACTCGAAATCGTGGTCGCCACGCATGCCGACGCCGACCACATCGAGGGTCTGGTGAGTGT
GCTGAAGCTGCTGCCGGTGGGCGAACTGTGGATAGGTCAGCGCAAGACCGAGGACCCGCTGCTGGCAGAGTTGCTCGACG
TGGCCGACCTGAAACACATTCCGGTGCGCGAGGTGCGGCGCGGCGACGGCCTTCAGGCGGGCGATATCTCGCTGACGGTG
CTGTGGCCCAGGGGCCAACCCTGGAGCACCGCCGACAACGACAACAGCGTGGTCATCCGGCTGGACAGCCCCAGGTTTCA
TACCGCCGTGCTGGGCGACCTGCCCGACCCCGCCGAGACACTGCTAGGCATGGGACAGCTGGATCTGCTCAAGACAGCCC
ATCACGGCAGCCGCTTTTCCAGCACCGACCCTTTTCTGAACGAGACCCAGCCCAAAGACGTGGTGATCAGCGTGGGACGC
AACACCTACGGCCACCCGAACCCTGACCTGCTCGCCCGACTGGCGGCACGTGGGGTGCGGGTGTGGCGCACCGATCAGGT
GGGAACGGTGCGCTGGCCGATTCCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(238-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.434

87.947

0.514