Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MF598_RS18410 Genome accession   NZ_CP092185
Coordinates   3707650..3708087 (+) Length   145 a.a.
NCBI ID   WP_038456921.1    Uniprot ID   -
Organism   Bacillus velezensis strain K203     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3702650..3713087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF598_RS18395 (MF598_18395) - 3705509..3705871 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  MF598_RS18400 (MF598_18400) hxlA 3706103..3706738 (+) 636 WP_221664223.1 3-hexulose-6-phosphate synthase -
  MF598_RS18405 (MF598_18405) hxlB 3706735..3707292 (+) 558 WP_038456922.1 6-phospho-3-hexuloisomerase -
  MF598_RS18410 (MF598_18410) nucA/comI 3707650..3708087 (+) 438 WP_038456921.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF598_RS18415 (MF598_18415) nin/comJ 3708108..3708506 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  MF598_RS18420 (MF598_18420) - 3708660..3708983 (-) 324 WP_007409357.1 YckD family protein -
  MF598_RS18425 (MF598_18425) - 3709055..3709489 (-) 435 WP_224224024.1 RDD family protein -
  MF598_RS18430 (MF598_18430) - 3709504..3710640 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  MF598_RS18435 (MF598_18435) - 3710705..3711907 (-) 1203 WP_224224023.1 GTP-binding protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16099.38 Da        Isoelectric Point: 8.4850

>NTDB_id=656285 MF598_RS18410 WP_038456921.1 3707650..3708087(+) (nucA/comI) [Bacillus velezensis strain K203]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKNDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=656285 MF598_RS18410 WP_038456921.1 3707650..3708087(+) (nucA/comI) [Bacillus velezensis strain K203]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAATGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641