Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MF598_RS07630 Genome accession   NZ_CP092185
Coordinates   1469777..1470544 (+) Length   255 a.a.
NCBI ID   WP_044802539.1    Uniprot ID   -
Organism   Bacillus velezensis strain K203     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1464777..1475544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF598_RS07600 (MF598_07600) - 1465060..1467192 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  MF598_RS07605 (MF598_07605) ybeY 1467193..1467666 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  MF598_RS07610 (MF598_07610) - 1467647..1468021 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  MF598_RS07615 (MF598_07615) - 1468145..1468555 (+) 411 WP_003152976.1 cytidine deaminase -
  MF598_RS07620 (MF598_07620) era 1468536..1469441 (+) 906 WP_007408285.1 GTPase Era -
  MF598_RS07625 (MF598_07625) - 1469597..1469740 (+) 144 WP_007408286.1 YqzL family protein -
  MF598_RS07630 (MF598_07630) recO 1469777..1470544 (+) 768 WP_044802539.1 DNA repair protein RecO Machinery gene
  MF598_RS07635 (MF598_07635) glyQ 1470846..1471733 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  MF598_RS07640 (MF598_07640) glyS 1471726..1473765 (+) 2040 WP_224223679.1 glycine--tRNA ligase subunit beta -
  MF598_RS07645 (MF598_07645) ccpN 1473866..1474504 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  MF598_RS07650 (MF598_07650) - 1474530..1475342 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=656247 MF598_RS07630 WP_044802539.1 1469777..1470544(+) (recO) [Bacillus velezensis strain K203]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=656247 MF598_RS07630 WP_044802539.1 1469777..1470544(+) (recO) [Bacillus velezensis strain K203]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894