Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB07_RS28100 Genome accession   NZ_CP108203
Coordinates   6205363..6206160 (-) Length   265 a.a.
NCBI ID   WP_329233606.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6200363..6211160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS28085 (OHB07_28050) - 6200609..6201325 (+) 717 WP_406464835.1 GNAT family N-acetyltransferase -
  OHB07_RS28090 (OHB07_28055) - 6201386..6203230 (+) 1845 WP_329233602.1 IucA/IucC family siderophore biosynthesis protein -
  OHB07_RS28095 (OHB07_28060) - 6203281..6205248 (+) 1968 WP_406464837.1 ATP-dependent DNA helicase -
  OHB07_RS28100 (OHB07_28065) dinR/lexA 6205363..6206160 (-) 798 WP_329233606.1 transcriptional repressor LexA Regulator
  OHB07_RS28105 (OHB07_28070) nrdR 6206685..6207200 (+) 516 WP_329233607.1 transcriptional regulator NrdR -
  OHB07_RS28110 (OHB07_28075) - 6207357..6210266 (+) 2910 WP_329233609.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28759.59 Da        Isoelectric Point: 7.0792

>NTDB_id=656245 OHB07_RS28100 WP_329233606.1 6205363..6206160(-) (dinR/lexA) [Streptomyces sp. NBC_00111]
MTTTADSATITAQDHRSQGRLEPVHAMNDAVMNAEGPEPTRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=656245 OHB07_RS28100 WP_329233606.1 6205363..6206160(-) (dinR/lexA) [Streptomyces sp. NBC_00111]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGGGCCGACTTGAGCCGGTGCATGCCAT
GAATGACGCAGTCATGAACGCGGAGGGGCCGGAGCCCACGCGCCCCGCACGCTCCTTGCCCGGCCGCCCCCCAGGAATCC
GGGCGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGGGGCTAT
CCCCCGTCGATGCGCGAGATCGGCCAGGCGGTGGGACTCTCCAGCACCTCGTCCGTGGCCCACCAGCTGATGGCTCTGGA
GCGTAAGGGCTTCCTGCGCCGCGACCCTCACCGTCCCCGCGCCTACGAGGTCAGGGGCTCGGACCAGCCCAGCACGCAGC
CGACCGACACCACCGGGAAGCCCGCCGCCTCGTACGTGCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
CGACTCGATGATCGAAGCAGCGATCATGGACGGGGACTGGGTCACCGTCCGGCGCCAGCCGGTCGCGGAGAACGGCGACA
TCGTGGCGGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTATGGCTCCTCCCGCAC
AACTCCGCCTACCAGCCGATCCCCGGTGACGAGGCGACGATCCTGGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37