Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHB07_RS17035 Genome accession   NZ_CP108203
Coordinates   3821159..3822571 (+) Length   470 a.a.
NCBI ID   WP_329230113.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3816159..3827571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS17015 (OHB07_16995) - 3816192..3817016 (-) 825 WP_329230107.1 sugar phosphate isomerase/epimerase -
  OHB07_RS17020 (OHB07_17000) - 3817225..3818172 (-) 948 WP_329230108.1 Ppx/GppA phosphatase family protein -
  OHB07_RS17025 (OHB07_17005) - 3818205..3819047 (+) 843 WP_329230110.1 hypothetical protein -
  OHB07_RS17030 (OHB07_17010) - 3819191..3820972 (-) 1782 WP_406463125.1 BACON domain-containing protein -
  OHB07_RS17035 (OHB07_17015) radA/sms 3821159..3822571 (+) 1413 WP_329230113.1 DNA repair protein RadA Machinery gene
  OHB07_RS17040 (OHB07_17020) disA 3822652..3823776 (+) 1125 WP_329230115.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB07_RS17045 (OHB07_17025) - 3823912..3824748 (-) 837 WP_405698052.1 hypothetical protein -
  OHB07_RS17050 (OHB07_17030) - 3825010..3825912 (+) 903 WP_329230117.1 A/G-specific adenine glycosylase -
  OHB07_RS17055 (OHB07_17035) - 3826095..3826679 (+) 585 WP_329230119.1 SigE family RNA polymerase sigma factor -
  OHB07_RS17060 (OHB07_17040) - 3826721..3827362 (+) 642 WP_405693722.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49489.54 Da        Isoelectric Point: 7.9937

>NTDB_id=656213 OHB07_RS17035 WP_329230113.1 3821159..3822571(+) (radA/sms) [Streptomyces sp. NBC_00111]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRINAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=656213 OHB07_RS17035 WP_329230113.1 3821159..3822571(+) (radA/sms) [Streptomyces sp. NBC_00111]
ATGGCTGCCCGTACGAAATCCGCGAAGGACAGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTCCGTACGACGGCGGCGG
GCCGCGTCTCCACCGCCGCGGTGCCGATCGGCCAGGTCGACAGCCGGCAGGCCACCGCGCGCTCGACCGGGGTCGGCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTACCCGGCGCCGTGGTGCTGCTCGCCGGGGAGCCCGGCGTCGGCAAGTCGAC
CCTCCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGACGACCACCGCACCCTCTACGTCACGGCGGAGGAATCCGCCAGCC
AGGTGCGGATGCGCGCCGACCGGATCAACGCGATCAACGACCACCTGTACCTGGCCGCCGAGACGGACCTCTCCGCCGTC
CTGGGACATCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCGGGAGCGCTCATCCGCGCTTCGAAGGAGCGCGGCATGTCGACCC
TCCTGGTGGGCCACGTGACCAAGGACGGCGCGATCGCCGGACCGCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGGCTCGTACGGGGCGTCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTGGCCGACCCTTCCGGGCTGTTCCTCACCCGCCGCGACGAGCCCGTCC
CCGGCACCTGCCTGACGGTCACCCTGGAGGGCAAGCGCCCGCTCGTCGCCGAGGTCCAGGCGCTGACGGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTTCTCGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGTGTGAAGCTCACCGAACCGGCCGCGGACC
TCGCGATCGCCCTGGCCCTGGCCAGTGCGGCCAGCGACACACCGCTCCCGAAAAACCTGGTCGCGATCGGCGAAGTGGGC
CTCGCCGGGGAGGTCAGAAGGGTGACGGGTGTCCAGAGGAGGCTCGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCGGGACAGGTCCCGGCCGGTATGAAGGTCACGGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TCCCCCGCCGGTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

41.943

96.383

0.404
  radA Streptococcus pneumoniae D39

41.943

96.383

0.404
  radA Streptococcus pneumoniae R6

41.943

96.383

0.404
  radA Streptococcus pneumoniae TIGR4

41.943

96.383

0.404
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396