Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHB07_RS13525 Genome accession   NZ_CP108203
Coordinates   3058247..3059248 (+) Length   333 a.a.
NCBI ID   WP_406466282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00111     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053247..3064248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB07_RS13500 (OHB07_13480) - 3053486..3054046 (-) 561 WP_406462524.1 hypothetical protein -
  OHB07_RS13505 (OHB07_13485) - 3054205..3054840 (+) 636 WP_406462526.1 TetR/AcrR family transcriptional regulator -
  OHB07_RS13510 (OHB07_13490) - 3055088..3056380 (+) 1293 WP_406462528.1 ABC transporter substrate-binding protein -
  OHB07_RS13515 (OHB07_13495) - 3056413..3057357 (+) 945 WP_329229079.1 sugar ABC transporter permease -
  OHB07_RS13520 (OHB07_13500) - 3057372..3058199 (+) 828 WP_329229080.1 carbohydrate ABC transporter permease -
  OHB07_RS13525 (OHB07_13505) cytR 3058247..3059248 (+) 1002 WP_406466282.1 LacI family DNA-binding transcriptional regulator Regulator
  OHB07_RS13530 (OHB07_13510) - 3059301..3061235 (+) 1935 WP_329229084.1 cellulase family glycosylhydrolase -
  OHB07_RS13535 (OHB07_13515) - 3061273..3063615 (+) 2343 WP_406462531.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHB07_RS13540 (OHB07_13520) - 3063714..3064055 (-) 342 WP_329229087.1 DUF5713 family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35010.00 Da        Isoelectric Point: 6.6109

>NTDB_id=656206 OHB07_RS13525 WP_406466282.1 3058247..3059248(+) (cytR) [Streptomyces sp. NBC_00111]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVMDAATELGWSPSASATALRRARTRTIALVVRRPTDVLGSDPHFSELITGL
EGELAPRGYGLLLHLVADMAQENALYERLVAEGRIDGAVLTDARADDPRPELLRSLGLPAVLLGAPDAASPVPRVGLGQQ
GAGIREAVAHLLELGHRRVAYVAGPAELLHTRLRLCAFEEALAEAGLGPVAVRHSDFTERAAVEVTEELLALPGRPTALV
FPNDSMAVCGIGTAQRAGLRVPDDLSVVGYDNLSLGRWVHPRLTTVDQQVQRVGAAAARTLLAGCGEDVPPPVLDGRPRL
VVRESTGPLRPPT

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=656206 OHB07_RS13525 WP_406466282.1 3058247..3059248(+) (cytR) [Streptomyces sp. NBC_00111]
GTGGCCGCCGCGGCGGGTGTGTCCACCGCGGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGAGGCCACCCG
CCGCCGGGTCATGGACGCCGCCACCGAGCTGGGCTGGTCCCCCAGCGCCTCCGCGACGGCGCTGCGCCGGGCCCGTACCC
GTACGATCGCGCTCGTCGTCCGGCGTCCCACCGACGTGCTCGGCTCCGACCCGCACTTCAGCGAGCTGATCACCGGCCTG
GAGGGCGAACTCGCCCCGCGCGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCGCAGGAGAACGCGCTGTACGA
GCGTCTGGTCGCCGAGGGCCGTATCGACGGTGCCGTGCTGACGGACGCCCGCGCCGACGACCCCCGCCCGGAACTGCTGC
GGAGCCTCGGACTGCCCGCCGTCCTGCTGGGTGCCCCCGACGCCGCCTCGCCCGTACCCCGGGTCGGGCTCGGGCAGCAG
GGCGCGGGCATAAGGGAGGCGGTCGCCCACCTGCTGGAGCTCGGCCACCGGCGCGTCGCCTACGTCGCGGGCCCGGCCGA
ACTCCTGCACACCCGGCTGCGTCTGTGCGCCTTCGAGGAGGCGCTGGCCGAGGCGGGGCTCGGGCCCGTCGCCGTACGGC
ACAGCGACTTCACCGAGCGGGCCGCCGTGGAGGTCACCGAGGAGCTGCTCGCGCTGCCCGGCCGGCCGACGGCCCTCGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGCACGGCGCAGCGCGCCGGGCTCCGGGTGCCCGACGACCTGTCGGT
CGTCGGCTACGACAACCTCTCGCTCGGCCGCTGGGTGCACCCCCGGCTCACCACCGTCGACCAGCAGGTGCAGCGCGTCG
GCGCCGCCGCCGCCCGCACCCTGCTCGCCGGCTGCGGGGAGGACGTACCCCCGCCGGTGCTCGACGGCCGCCCGCGCCTG
GTCGTACGCGAGTCGACCGGCCCGCTGAGACCCCCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.228

100

0.363