Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA48_RS32220 Genome accession   NZ_CP108201
Coordinates   6870883..6871662 (-) Length   259 a.a.
NCBI ID   WP_266685256.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6865883..6876662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS32210 (OHA48_32235) - 6867366..6868178 (+) 813 WP_266685254.1 GNAT family N-acetyltransferase -
  OHA48_RS32215 (OHA48_32240) - 6868633..6870609 (+) 1977 WP_266685255.1 ATP-dependent DNA helicase -
  OHA48_RS32220 (OHA48_32245) dinR/lexA 6870883..6871662 (-) 780 WP_266685256.1 transcriptional repressor LexA Regulator
  OHA48_RS32225 (OHA48_32250) nrdR 6872225..6872785 (+) 561 WP_266685257.1 transcriptional regulator NrdR -
  OHA48_RS32230 (OHA48_32255) - 6872948..6875851 (+) 2904 WP_266685258.1 vitamin B12-dependent ribonucleotide reductase -
  OHA48_RS32235 (OHA48_32260) - 6876130..6876396 (+) 267 WP_266799896.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27946.65 Da        Isoelectric Point: 6.7640

>NTDB_id=656168 OHA48_RS32220 WP_266685256.1 6870883..6871662(-) (dinR/lexA) [Streptomyces sp. NBC_00114]
MTTTADSATITAQDRSQGQLEPVHAMNEPVSPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=656168 OHA48_RS32220 WP_266685256.1 6870883..6871662(-) (dinR/lexA) [Streptomyces sp. NBC_00114]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCAACTCGAGCCGGTGCATGCGATGAA
TGAACCCGTGAGCCCCGAGGGGCACAAGCGCTCCTTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGGCTCA
CCGACCGGCAGCGTCGGGTGATCGAGGTCATCAGGGATTCCGTACAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGACTGTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCACACCGCCCGCGCGCGTACGAGGTCCGCGGCTCCGACCAGGGCGCCTCCGCGCAGCCCACCGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTGGGCCGTATCGCCGCCGGCGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTGGTCGGTGACGGAGAGCTGTTCGTGCTGAAGGTCGTCGGTGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTGCGCCGCCAGCCCGTCGCCGAAAACGGTGACATCGTCGCCGCGATGCTCG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375