Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HP1WT_RS00220 Genome accession   NZ_AP013354
Coordinates   38475..39452 (+) Length   325 a.a.
NCBI ID   WP_001862530.1    Uniprot ID   A0AAC8MZ36
Organism   Helicobacter pylori 26695-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33475..44452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1WT_RS00190 panD 34895..35248 (+) 354 WP_000142250.1 aspartate 1-decarboxylase -
  HP1WT_RS00195 - 35251..35544 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HP1WT_RS00200 - 35544..36548 (+) 1005 WP_000468475.1 PDZ domain-containing protein -
  HP1WT_RS00205 comB6 36556..37611 (+) 1056 WP_000786660.1 P-type conjugative transfer protein TrbL Machinery gene
  HP1WT_RS08835 - 37627..37741 (+) 115 Protein_33 comB7 lipoprotein -
  HP1WT_RS00215 comB8 37738..38475 (+) 738 WP_000660509.1 type IV secretion system protein Machinery gene
  HP1WT_RS00220 comB9 38475..39452 (+) 978 WP_001862530.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HP1WT_RS00225 comB10 39445..40581 (+) 1137 WP_001045839.1 DNA type IV secretion system protein ComB10 Machinery gene
  HP1WT_RS00230 - 40651..42063 (+) 1413 WP_000694809.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HP1WT_RS00235 gmd 42105..43250 (+) 1146 WP_000659810.1 GDP-mannose 4,6-dehydratase -
  HP1WT_RS00240 - 43243..44175 (+) 933 WP_001002442.1 GDP-L-fucose synthase family protein -
  HP1WT_RS09080 - 44203..44419 (-) 217 Protein_40 anthranilate synthase component I -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 37362.07 Da        Isoelectric Point: 9.5485

>NTDB_id=65616 HP1WT_RS00220 WP_001862530.1 38475..39452(+) (comB9) [Helicobacter pylori 26695-1]
MRKVLYALVGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KAKDE

Nucleotide


Download         Length: 978 bp        

>NTDB_id=65616 HP1WT_RS00220 WP_001862530.1 38475..39452(+) (comB9) [Helicobacter pylori 26695-1]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAACGATCGTATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCCATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAGTCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTCAAA
AAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

96.012

100

0.963

Multiple sequence alignment