Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHA48_RS17955 Genome accession   NZ_CP108201
Coordinates   3882342..3883340 (-) Length   332 a.a.
NCBI ID   WP_266681405.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3877342..3888340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS17935 (OHA48_17975) - 3877838..3878242 (-) 405 WP_266797346.1 hypothetical protein -
  OHA48_RS17940 (OHA48_17980) - 3878424..3879989 (-) 1566 WP_266797347.1 MFS transporter -
  OHA48_RS17945 (OHA48_17985) - 3880052..3881017 (+) 966 WP_266681401.1 YafY family protein -
  OHA48_RS17950 (OHA48_17990) - 3881113..3881832 (-) 720 WP_266681403.1 TetR/AcrR family transcriptional regulator -
  OHA48_RS17955 (OHA48_17995) rpoS 3882342..3883340 (-) 999 WP_266681405.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHA48_RS17960 (OHA48_18000) - 3883536..3884054 (+) 519 WP_266681407.1 GNAT family N-acetyltransferase -
  OHA48_RS17965 (OHA48_18005) - 3884152..3884943 (-) 792 WP_266681409.1 dioxygenase -
  OHA48_RS17970 (OHA48_18010) - 3885093..3885623 (+) 531 WP_266797350.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHA48_RS17975 (OHA48_18015) - 3885732..3887279 (-) 1548 WP_266681413.1 MFS transporter -
  OHA48_RS17980 (OHA48_18020) - 3887390..3888055 (-) 666 WP_266681415.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37300.20 Da        Isoelectric Point: 5.5729

>NTDB_id=656133 OHA48_RS17955 WP_266681405.1 3882342..3883340(-) (rpoS) [Streptomyces sp. NBC_00114]
MATRAVARRKSATGETADRASSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGDEESKAE
ASREELQALVDDGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAKELDTKPDRVIDVLDWARDPVSLNMAVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKKHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=656133 OHA48_RS17955 WP_266681405.1 3882342..3883340(-) (rpoS) [Streptomyces sp. NBC_00114]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCACCGGCGAGACGGCCGACAGGGCAAGCAGTGTTCGCGCTCACGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTCCTCGACGGAGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTTCAGGCCCTGGTCGACGACGGTGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGGCGTTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCCGGACTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCGATC
ACCCGCTCGATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGTGACCCGGAGCCCGCGGAGATCGCCAAGGAGCTCGACACGAAGCCGGACC
GCGTGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGGCGGTGGACGACGAGGGTGAGACCCAGTTC
GGCGACCTCCTGGAGGACACCTCGGCGGTCTCCCCCGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTCGACCA
CCTCATCGGCCGCCTCGACCCCCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACGGAGGTCGGCAAGAAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCCCGGTCCACGGGCTTCGAGGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361