Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA48_RS15825 Genome accession   NZ_CP108201
Coordinates   3405129..3406172 (-) Length   347 a.a.
NCBI ID   WP_266797012.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400129..3411172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS15790 (OHA48_15820) - 3400454..3400981 (-) 528 WP_266680680.1 universal stress protein -
  OHA48_RS15795 (OHA48_15825) - 3401290..3401622 (+) 333 WP_266680682.1 hypothetical protein -
  OHA48_RS15800 (OHA48_15830) - 3402001..3403233 (+) 1233 WP_266797006.1 helix-turn-helix domain-containing protein -
  OHA48_RS15805 (OHA48_15835) orn 3403400..3404002 (+) 603 WP_266797008.1 oligoribonuclease -
  OHA48_RS15815 (OHA48_15845) - 3404171..3404407 (-) 237 WP_266797010.1 hypothetical protein -
  OHA48_RS15820 (OHA48_15850) - 3404528..3404845 (+) 318 Protein_3137 GNAT family N-acetyltransferase -
  OHA48_RS15825 (OHA48_15860) cytR 3405129..3406172 (-) 1044 WP_266797012.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA48_RS15830 (OHA48_15865) - 3406567..3407889 (+) 1323 WP_266797013.1 ABC transporter substrate-binding protein -
  OHA48_RS15835 (OHA48_15870) - 3407886..3408911 (+) 1026 WP_266797015.1 carbohydrate ABC transporter permease -
  OHA48_RS15840 (OHA48_15875) - 3408908..3409813 (+) 906 WP_266797017.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37548.45 Da        Isoelectric Point: 6.0132

>NTDB_id=656127 OHA48_RS15825 WP_266797012.1 3405129..3406172(-) (cytR) [Streptomyces sp. NBC_00114]
MSRSRSGGRPTLEEVAARAGVGRGTVSRVINGSPRVSDATRAAVEAAVAELGYVPNTAARALAANRTDAIALVVPEPETR
FFAEPYFSDMLKGVGAELSDTEMQLLLIFAGGDKERRRLAQYLAAHRVDGVLLVSVHADDPLPDLLAQLEIPAVISGPRS
AAETLTSVDSDNYGGGRSAVEHLAVRGRRSIAHITGRLDVYGAQRRVDGYRDALRDAGHEVDEQLIEPGDFTEEGGRRAM
TKLLARRPDLDAVFAGSDVMAAGARQVLREKGRRIPDDVALVGYDDSAIARHMDPPLTSVRQPIEEMGRRMIDLLLGEIA
DRRPAVSRDLERRQMVLATELVTRTSS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=656127 OHA48_RS15825 WP_266797012.1 3405129..3406172(-) (cytR) [Streptomyces sp. NBC_00114]
ATGTCGCGGAGCCGAAGCGGGGGGCGGCCCACGCTCGAAGAGGTGGCCGCCCGCGCCGGCGTGGGCCGCGGCACGGTCTC
CCGGGTGATCAACGGCTCGCCCAGGGTCAGCGACGCGACCCGGGCCGCGGTCGAGGCGGCGGTGGCCGAGCTCGGCTACG
TCCCCAACACGGCCGCTCGCGCCCTCGCGGCCAACCGCACCGACGCGATCGCCCTGGTCGTCCCCGAGCCGGAGACCCGC
TTCTTCGCGGAGCCGTACTTCTCGGACATGCTGAAGGGTGTCGGCGCCGAGCTGTCGGACACGGAGATGCAGCTTCTGCT
GATCTTCGCGGGCGGCGACAAGGAGCGCCGCCGGCTGGCCCAGTACCTGGCCGCCCACCGCGTGGACGGCGTCCTGCTGG
TCTCGGTGCACGCGGACGACCCGCTTCCGGATCTGCTGGCCCAGCTGGAGATCCCGGCGGTGATCAGCGGTCCGCGGTCG
GCCGCGGAGACGCTGACGTCGGTGGACTCGGACAACTACGGCGGCGGCCGCTCGGCGGTCGAGCACCTGGCCGTCCGGGG
CCGCCGCAGTATCGCGCACATCACGGGCCGCCTCGACGTCTACGGCGCCCAGCGGCGCGTCGACGGCTACCGCGACGCCC
TGCGCGACGCGGGCCACGAGGTCGACGAACAGCTCATCGAGCCGGGCGACTTCACCGAGGAGGGCGGCCGCCGGGCGATG
ACGAAACTGCTCGCCCGCCGCCCCGACCTGGACGCGGTCTTCGCGGGCTCGGACGTGATGGCGGCCGGCGCCCGCCAGGT
GCTGCGCGAGAAGGGCCGCCGCATCCCCGACGACGTGGCGCTCGTCGGCTACGACGACTCGGCCATCGCCCGCCACATGG
ACCCCCCGCTCACCAGCGTCCGCCAGCCCATCGAGGAGATGGGCCGCCGCATGATCGACCTCCTGCTCGGCGAGATCGCC
GACCGCCGCCCGGCCGTCTCCCGCGATCTGGAACGCCGGCAGATGGTACTGGCGACGGAGCTGGTGACGCGGACGTCGTC
CTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.182

100

0.366