Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA48_RS13565 Genome accession   NZ_CP108201
Coordinates   2917487..2919418 (+) Length   643 a.a.
NCBI ID   WP_266680038.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912487..2924418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS13550 (OHA48_13575) - 2913712..2914017 (+) 306 WP_266680032.1 YtxH domain-containing protein -
  OHA48_RS13555 (OHA48_13580) - 2914102..2915544 (+) 1443 WP_266680034.1 FGGY family carbohydrate kinase -
  OHA48_RS13560 (OHA48_13585) rcrP 2915754..2917487 (+) 1734 WP_266680036.1 ABC transporter ATP-binding protein Regulator
  OHA48_RS13565 (OHA48_13590) rcrQ 2917487..2919418 (+) 1932 WP_266680038.1 ABC transporter ATP-binding protein Regulator
  OHA48_RS13570 (OHA48_13595) - 2919583..2920881 (-) 1299 WP_266680040.1 RNA polymerase sigma factor -
  OHA48_RS13575 (OHA48_13600) dnaG 2921343..2923244 (-) 1902 WP_266680047.1 DNA primase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69650.16 Da        Isoelectric Point: 6.1452

>NTDB_id=656122 OHA48_RS13565 WP_266680038.1 2917487..2919418(+) (rcrQ) [Streptomyces sp. NBC_00114]
MAGPMARMMGQGGGPDSRSMDFKVSGKRLIARFKPERLTIYALLVCVVVSVGLNVIGPKILGKATDLVFSGIIGRQMPAG
ATKEQVLASMRERGQGQVADMLRSTDFTPGKGIDFGAVGNVLLLAVCTFLVAGLLMAVATRLVNRAVNRTMYRMREDVQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAVMFWVSWLLALVALVTVPLSFVVATRVG
KRSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVRGARPEELRGLVEL
ENISFRYDPDKPLIENLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIATMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASRDVTPGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAADGAYGRLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=656122 OHA48_RS13565 WP_266680038.1 2917487..2919418(+) (rcrQ) [Streptomyces sp. NBC_00114]
ATGGCCGGGCCGATGGCACGGATGATGGGCCAGGGCGGTGGCCCCGACAGCCGTTCGATGGACTTCAAGGTGTCGGGCAA
ACGCCTGATCGCCCGGTTCAAACCGGAACGTCTCACGATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTCGGCCTGA
ACGTGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCTCCGGCATCATCGGGCGGCAGATGCCGGCCGGG
GCCACGAAGGAGCAGGTCCTCGCCTCCATGCGGGAGCGGGGCCAGGGCCAGGTCGCCGACATGCTGCGCAGCACCGACTT
CACGCCGGGCAAGGGCATCGACTTCGGCGCGGTGGGGAACGTCCTGCTGCTCGCGGTGTGTACGTTCCTCGTCGCCGGTC
TGCTGATGGCGGTGGCGACCCGACTCGTGAACCGGGCCGTCAACCGGACCATGTACCGGATGCGCGAGGACGTACAGGCG
AAGCTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGTGAGGTGCTGTCCCGGGCCACGAACGACATCGA
CAACATCGGTCAGACGCTGCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTCGCGGTGA
TGTTCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTCGCCACACGCGTCGGC
AAGCGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CCGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCCCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTCGGTGGACTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGGTGCGCGGCGCGCGGCCCGAGGAGCTGCGGGGGCTGGTGGAGCTG
GAGAACATCTCCTTCCGCTACGACCCCGACAAGCCGCTGATCGAGAACCTGTCCCTGAAGGCGGAACCCGGGCACACCGT
CGCTATCGTCGGCCCGACGGGAGCCGGCAAGACCACGCTGGTCAATCTGCTCATGCGGTTCTACGACGTGTCCGGCGGGC
GTATCACTCTCGACGGCGTCGACATCGCGACCATGTCCCGGGACGAGCTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGACGTCACGCCGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACCCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCT
CGGGTGTCAGTGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCGGACCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTGGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCCCACGGCAGGACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGGTCGATCGTGGAAC
AGGGCGCCCACACGGACCTGTTGGCGGCCGACGGGGCGTACGGGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCC
GAAGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-352)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.112

0.384