Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA48_RS12420 Genome accession   NZ_CP108201
Coordinates   2687074..2687643 (+) Length   189 a.a.
NCBI ID   WP_323182944.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00114     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682074..2692643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA48_RS12395 (OHA48_12400) - 2682170..2682775 (-) 606 Protein_2463 response regulator -
  OHA48_RS12400 (OHA48_12405) - 2682792..2683454 (-) 663 WP_266679686.1 AfsR/SARP family transcriptional regulator -
  OHA48_RS12405 (OHA48_12410) - 2684247..2684780 (-) 534 WP_266679688.1 hypothetical protein -
  OHA48_RS12410 (OHA48_12415) - 2685128..2686306 (+) 1179 WP_266679690.1 sensor histidine kinase -
  OHA48_RS12415 (OHA48_12420) - 2686303..2687007 (+) 705 WP_266796372.1 response regulator transcription factor -
  OHA48_RS12420 (OHA48_12425) cytR 2687074..2687643 (+) 570 WP_323182944.1 substrate-binding domain-containing protein Regulator
  OHA48_RS12425 (OHA48_12430) - 2687749..2688060 (-) 312 WP_266679694.1 hypothetical protein -
  OHA48_RS12430 (OHA48_12435) - 2688057..2688929 (-) 873 WP_266796374.1 phytanoyl-CoA dioxygenase family protein -
  OHA48_RS12435 (OHA48_12440) - 2688996..2689793 (-) 798 WP_266679698.1 AraC family transcriptional regulator -
  OHA48_RS12440 (OHA48_12450) - 2690298..2690648 (+) 351 WP_266679700.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OHA48_RS12445 (OHA48_12455) - 2690645..2691214 (+) 570 WP_266796377.1 Fic family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 19973.71 Da        Isoelectric Point: 5.0047

>NTDB_id=656120 OHA48_RS12420 WP_323182944.1 2687074..2687643(+) (cytR) [Streptomyces sp. NBC_00114]
MDDVPDGVPYVGATNFRGGRSAARHVAGLGHRRIAMISGPDHAFCLARVAGYRSVLETAGLPADLELIIRTGLTREDGQA
AADKLLARPDRPTAIFTANDLQALGVYQAARDAGLRIPEDLSVVGYDDVPVVAWADPPLTTVHQPLAEMAAAATELALKL
GRGEQVPQLGLEIATRLVVRESTAPPPQD

Nucleotide


Download         Length: 570 bp        

>NTDB_id=656120 OHA48_RS12420 WP_323182944.1 2687074..2687643(+) (cytR) [Streptomyces sp. NBC_00114]
ATGGACGACGTCCCCGACGGCGTCCCGTACGTCGGCGCCACCAACTTCAGGGGCGGTCGGTCCGCGGCACGCCACGTGGC
CGGCCTCGGCCACCGGCGTATCGCGATGATCAGCGGTCCCGATCACGCGTTCTGCCTGGCGCGGGTGGCCGGCTACCGCT
CGGTGCTGGAGACGGCCGGGCTTCCGGCGGACCTGGAACTGATCATCCGCACGGGACTCACCCGGGAGGACGGACAGGCC
GCGGCGGACAAACTCCTTGCCCGCCCCGACCGGCCGACCGCGATCTTCACGGCGAACGACCTGCAGGCGCTCGGCGTCTA
CCAGGCGGCGCGCGATGCCGGGCTGCGCATCCCGGAGGACCTGAGCGTGGTCGGCTACGACGATGTGCCGGTCGTGGCCT
GGGCGGACCCGCCGCTGACGACCGTGCACCAGCCGCTCGCCGAAATGGCCGCAGCGGCAACGGAGTTGGCCCTGAAGCTC
GGCCGCGGCGAGCAGGTCCCCCAGCTCGGCCTGGAGATCGCCACACGTCTCGTGGTCCGTGAGAGCACGGCCCCACCGCC
GCAGGACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(23-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

43.407

96.296

0.418
  cytR Vibrio parahaemolyticus RIMD 2210633

42.222

95.238

0.402