Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU25_RS35100 Genome accession   NZ_CP108199
Coordinates   7568430..7569215 (-) Length   261 a.a.
NCBI ID   WP_100591111.1    Uniprot ID   A0ABV4SX88
Organism   Streptomyces sp. NBC_00117     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7563430..7574215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU25_RS35090 (OHU25_35075) - 7564254..7566260 (+) 2007 WP_382060981.1 IucA/IucC family protein -
  OHU25_RS35095 (OHU25_35080) - 7566301..7568283 (+) 1983 WP_326710774.1 ATP-dependent DNA helicase -
  OHU25_RS35100 (OHU25_35085) dinR/lexA 7568430..7569215 (-) 786 WP_100591111.1 transcriptional repressor LexA Regulator
  OHU25_RS35105 (OHU25_35090) nrdR 7569732..7570277 (+) 546 WP_116509015.1 transcriptional regulator NrdR -
  OHU25_RS35110 (OHU25_35095) - 7570414..7573314 (+) 2901 WP_328542284.1 vitamin B12-dependent ribonucleotide reductase -
  OHU25_RS35115 (OHU25_35100) - 7573392..7573919 (-) 528 WP_328542283.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28153.94 Da        Isoelectric Point: 7.4237

>NTDB_id=656084 OHU25_RS35100 WP_100591111.1 7568430..7569215(-) (dinR/lexA) [Streptomyces sp. NBC_00117]
MTTTADSATITAQDRSQGRLEPVHAMNDASMSAEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=656084 OHU25_RS35100 WP_100591111.1 7568430..7569215(-) (dinR/lexA) [Streptomyces sp. NBC_00117]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCATCCATGAGCGCGGAGGGGCCAAAGCCCGCGCGCTCCCTGCCGGGCCGACCTCCCGGAATCCGGGCGGACAGCT
CGGGGCTCACGGACAGGCAGCGCCGCGTCATCGAGGTGATCAGGGACTCCGTGCAGCGGCGTGGTTACCCGCCGTCGATG
CGGGAGATCGGCCAGGCGGTAGGCCTGTCGAGCACGTCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCCGCGCCTACGAGGTCCGTGGCTCCGACCAGCCGAGCGCGCAGCCCACGGACACCG
CAGGCAAGCCGGCCGCGTCGTACGTCCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCGGAAGAGTCCGTC
GAGGACGTGTTCCCCCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCTGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGAGGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAACTCCGCGTAC
CAGCCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCCGTTCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375