Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU25_RS19935 Genome accession   NZ_CP108199
Coordinates   4181971..4183899 (+) Length   642 a.a.
NCBI ID   WP_326713127.1    Uniprot ID   A0ABV4SIJ6
Organism   Streptomyces sp. NBC_00117     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4176971..4188899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU25_RS19920 (OHU25_19885) - 4178270..4178578 (+) 309 WP_326713129.1 YtxH domain-containing protein -
  OHU25_RS19925 (OHU25_19890) - 4178663..4180102 (+) 1440 WP_326713128.1 FGGY family carbohydrate kinase -
  OHU25_RS19930 (OHU25_19895) rcrP 4180238..4181971 (+) 1734 WP_326716102.1 ABC transporter ATP-binding protein Regulator
  OHU25_RS19935 (OHU25_19900) rcrQ 4181971..4183899 (+) 1929 WP_326713127.1 ABC transporter ATP-binding protein Regulator
  OHU25_RS19940 (OHU25_19905) - 4184049..4185440 (-) 1392 WP_326713126.1 sigma-70 family RNA polymerase sigma factor -
  OHU25_RS19945 (OHU25_19910) dnaG 4185605..4187503 (-) 1899 WP_327577559.1 DNA primase -
  OHU25_RS19950 (OHU25_19915) - 4187538..4188812 (-) 1275 WP_327577560.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69355.75 Da        Isoelectric Point: 5.3129

>NTDB_id=656040 OHU25_RS19935 WP_326713127.1 4181971..4183899(+) (rcrQ) [Streptomyces sp. NBC_00117]
MAGPGGRMMAGGSPDQRSMDFKGSGKRLIRQFKPEKTTMFAMVACVVLSVGLSVLGPKILGRATDLVFAGIIGRQMPAGS
SKAQVIEGMRAKGDSGVADMLSGIDFTPGQGIDFGTVGSVLGIALCTFLGAGLLMAVATRLSNRALNKTVFRMREDIQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSFLIATRVGK
RSQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGMMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPGEKPDLLRGLVEFE
NVSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDT
WLFGGTIADNIAYGAAKDVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGDIVEQGTHDALRAAGGAYERLYEAQFAQAVVE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=656040 OHU25_RS19935 WP_326713127.1 4181971..4183899(+) (rcrQ) [Streptomyces sp. NBC_00117]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCAGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTCATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTTCGCGATGGTCGCGTGTGTCGTCCTGAGTGTGGGCCTGTCGG
TGCTGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTCAGATGCCCGCCGGGAGC
AGCAAGGCGCAGGTCATCGAGGGGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCCGGGATCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGGGACCGTGGGCTCCGTGCTCGGGATCGCCCTGTGTACGTTCCTGGGGGCCGGTCTGC
TGATGGCCGTGGCGACGCGGCTGTCCAACCGGGCGCTCAACAAGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCGTCGGCGTGCTGGTGATGATGT
TCTGGATCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGTGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTCTTCGGGCGTCAGGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGACGCTCTCTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTGAACTATGTGCTGGTCGCC
GTGGTGGGTGGCCTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGACGAGCAGGAGGCCGACCCGGTGCCGGGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAG
AACGTGTCCTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTCTCCCTCGCCGTGGAGCCGGGGCACACCGTCGC
CATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGCTCCGCTTCTACGAGGTCACCGGCGGGCGCA
TCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGAATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCGGCCAAGGACGTCACCCGGGAGCAGATCGAGGAGGC
GGCGCGGGCCGCCCACGCGGACCGGTTCATCCGAACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCACGCGCGTTCCTTTCGGACCCGGTGATACTCGTCCTCGACGAG
GCGACGAGCTCCGTCGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGGACCAGCTT
CGTCATCGCTCACCGGCTGTCCACGATCCGCGACGCCGACACCATCCTGGTGATGGAGAACGGGGACATCGTGGAGCAGG
GCACCCACGATGCGCTGCGCGCCGCGGGTGGGGCGTACGAGCGGCTGTACGAGGCTCAGTTCGCGCAGGCCGTGGTGGAG
GTGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.777

96.262

0.393