Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LGL65_RS20100 Genome accession   NZ_CP092110
Coordinates   3924246..3924854 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain LOH112     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3919246..3929854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS20080 dnaD 3919487..3920185 (+) 699 WP_017418023.1 DNA replication protein DnaD -
  LGL65_RS20085 nth 3920204..3920863 (+) 660 WP_007612187.1 endonuclease III -
  LGL65_RS20090 - 3920860..3921351 (+) 492 WP_012117839.1 YpoC family protein -
  LGL65_RS20095 - 3921430..3924207 (-) 2778 WP_017418022.1 PBP1A family penicillin-binding protein -
  LGL65_RS20100 recU 3924246..3924854 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  LGL65_RS20105 - 3924896..3925858 (+) 963 WP_032864187.1 DUF2515 domain-containing protein -
  LGL65_RS20110 sspM 3925902..3926006 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LGL65_RS20115 - 3926212..3926457 (+) 246 WP_014418233.1 DUF5446 family protein -
  LGL65_RS20120 - 3926503..3926871 (+) 369 WP_017418019.1 YppE family protein -
  LGL65_RS20125 - 3926910..3927092 (-) 183 WP_003153532.1 YppF family protein -
  LGL65_RS20130 - 3927279..3927746 (+) 468 WP_017418018.1 YppG family protein -
  LGL65_RS20135 - 3927776..3928189 (-) 414 WP_017418017.1 hypothetical protein -
  LGL65_RS20140 - 3928328..3928834 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=656000 LGL65_RS20100 WP_003153521.1 3924246..3924854(-) (recU) [Bacillus velezensis strain LOH112]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=656000 LGL65_RS20100 WP_003153521.1 3924246..3924854(-) (recU) [Bacillus velezensis strain LOH112]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896