Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LGL65_RS18525 Genome accession   NZ_CP092110
Coordinates   3593634..3594401 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain LOH112     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3588634..3599401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS18495 - 3588917..3591049 (+) 2133 WP_014418406.1 HD family phosphohydrolase -
  LGL65_RS18500 ybeY 3591050..3591523 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LGL65_RS18505 - 3591504..3591878 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LGL65_RS18510 - 3592002..3592412 (+) 411 WP_003152976.1 cytidine deaminase -
  LGL65_RS18515 era 3592393..3593298 (+) 906 WP_007408285.1 GTPase Era -
  LGL65_RS18520 - 3593454..3593597 (+) 144 WP_007408286.1 YqzL family protein -
  LGL65_RS18525 recO 3593634..3594401 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LGL65_RS18530 glyQ 3594703..3595590 (+) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  LGL65_RS18535 glyS 3595583..3597622 (+) 2040 WP_017418170.1 glycine--tRNA ligase subunit beta -
  LGL65_RS18540 ccpN 3597722..3598360 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  LGL65_RS18545 - 3598386..3599198 (+) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=655989 LGL65_RS18525 WP_003152982.1 3593634..3594401(+) (recO) [Bacillus velezensis strain LOH112]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=655989 LGL65_RS18525 WP_003152982.1 3593634..3594401(+) (recO) [Bacillus velezensis strain LOH112]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CGAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894