Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LGL65_RS17455 Genome accession   NZ_CP092110
Coordinates   3396384..3397136 (+) Length   250 a.a.
NCBI ID   WP_063636761.1    Uniprot ID   A0A7W4LWP0
Organism   Bacillus velezensis strain LOH112     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391384..3402136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS17440 - 3391606..3391797 (-) 192 WP_003152639.1 hypothetical protein -
  LGL65_RS17445 - 3392250..3394892 (+) 2643 WP_017418286.1 valine--tRNA ligase -
  LGL65_RS17450 - 3394951..3396243 (+) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LGL65_RS17455 comC 3396384..3397136 (+) 753 WP_063636761.1 A24 family peptidase Machinery gene
  LGL65_RS17460 - 3397263..3398264 (+) 1002 WP_025649687.1 SPOR domain-containing protein -
  LGL65_RS17465 - 3398405..3398974 (+) 570 WP_012118105.1 Maf family protein -
  LGL65_RS17470 radC 3399006..3399413 (+) 408 Protein_3390 DNA repair protein RadC -
  LGL65_RS17475 - 3399426..3400850 (-) 1425 WP_017418281.1 recombinase family protein -
  LGL65_RS17480 - 3400889..3401335 (-) 447 WP_017418280.1 ImmA/IrrE family metallo-endopeptidase -
  LGL65_RS17485 - 3401349..3401783 (-) 435 WP_017418279.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27160.87 Da        Isoelectric Point: 9.2521

>NTDB_id=655982 LGL65_RS17455 WP_063636761.1 3396384..3397136(+) (comC) [Bacillus velezensis strain LOH112]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=655982 LGL65_RS17455 WP_063636761.1 3396384..3397136(+) (comC) [Bacillus velezensis strain LOH112]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4LWP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572