NTDB

Overview

Name	rapF	Type	Regulator
Locus tag	LGL65_RS12435	Genome accession	NZ_CP092110
Coordinates	2424950..2426095 (-)	Length	381 a.a.
NCBI ID	WP_017418708.1	Uniprot ID	-
Organism	Bacillus velezensis strain LOH112
Function	inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2419950..2431095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGL65_RS12410	-	2420234..2420665 (+)	432	WP_017418704.1	hypothetical protein	-
LGL65_RS12415	-	2420690..2422762 (-)	2073	WP_017418705.1	transglycosylase domain-containing protein	-
LGL65_RS12420	speE	2422962..2423792 (+)	831	WP_017418706.1	spermidine synthase	-
LGL65_RS12425	speB	2423852..2424724 (+)	873	WP_003151054.1	agmatinase	-
LGL65_RS12430	-	2424847..2424966 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
LGL65_RS12435	rapF	2424950..2426095 (-)	1146	WP_017418708.1	tetratricopeptide repeat protein	Regulator
LGL65_RS12440	-	2426387..2426815 (+)	429	WP_014419128.1	DUF1934 family protein	-
LGL65_RS12445	argS	2426812..2428482 (+)	1671	WP_025649385.1	arginine--tRNA ligase	-
LGL65_RS12450	narK	2428617..2429807 (+)	1191	WP_017418712.1	nitrate transporter NarK	-
LGL65_RS12455	fnr	2429905..2430621 (+)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-

Sequence

Protein

Download Length: 381 a.a. Molecular weight: 45782.29 Da Isoelectric Point: 5.0722

                                >NTDB_id=655965 LGL65_RS12435 WP_017418708.1 2424950..2426095(-) (rapF) [Bacillus velezensis strain LOH112]

MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR

LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS

MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE

AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI

NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

Download Length: 1146 bp

                                >NTDB_id=655965 LGL65_RS12435 WP_017418708.1 2424950..2426095(-) (rapF) [Bacillus velezensis strain LOH112]

GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC

GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT

CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA

CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG

GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG

TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG

ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT

ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT

TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG

GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT

ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG

AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA

AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA

TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG

TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533

Detailed information NTG0655965