Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LGL65_RS08780 Genome accession   NZ_CP092110
Coordinates   1719744..1720181 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LOH112     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1714744..1725181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS08765 - 1717630..1717992 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  LGL65_RS08770 hxlA 1718224..1718859 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  LGL65_RS08775 hxlB 1718856..1719413 (+) 558 WP_077721772.1 6-phospho-3-hexuloisomerase -
  LGL65_RS08780 nucA/comI 1719744..1720181 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LGL65_RS08785 nin/comJ 1720202..1720600 (+) 399 WP_017419379.1 competence protein ComJ Regulator
  LGL65_RS08790 - 1720641..1722077 (-) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  LGL65_RS08795 - 1722181..1722504 (-) 324 WP_007409357.1 YckD family protein -
  LGL65_RS08800 - 1722576..1723010 (-) 435 WP_014416871.1 RDD family protein -
  LGL65_RS08805 - 1723025..1724161 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=655954 LGL65_RS08780 WP_003156588.1 1719744..1720181(+) (nucA/comI) [Bacillus velezensis strain LOH112]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=655954 LGL65_RS08780 WP_003156588.1 1719744..1720181(+) (nucA/comI) [Bacillus velezensis strain LOH112]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641