Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LGL65_RS06225 Genome accession   NZ_CP092110
Coordinates   1204673..1205464 (-) Length   263 a.a.
NCBI ID   WP_025650231.1    Uniprot ID   -
Organism   Bacillus velezensis strain LOH112     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199673..1210464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL65_RS06185 - 1199943..1200278 (-) 336 WP_017419152.1 SdpI family protein -
  LGL65_RS06190 - 1200364..1200891 (-) 528 WP_014417238.1 SH3 domain-containing protein -
  LGL65_RS06195 - 1201023..1201292 (-) 270 WP_003155492.1 YfhJ family protein -
  LGL65_RS06200 - 1201416..1201568 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LGL65_RS06205 - 1201713..1202624 (+) 912 WP_014417237.1 serine protease -
  LGL65_RS06210 - 1202587..1202976 (+) 390 WP_014417236.1 DUF2606 family protein -
  LGL65_RS06215 - 1203016..1204209 (-) 1194 WP_025650229.1 MFS transporter -
  LGL65_RS06220 - 1204355..1204666 (-) 312 WP_025650230.1 YfhH family protein -
  LGL65_RS06225 recX 1204673..1205464 (-) 792 WP_025650231.1 recombination regulator RecX Regulator
  LGL65_RS06230 - 1205556..1206455 (+) 900 WP_025650232.1 TIGR01777 family oxidoreductase -
  LGL65_RS06235 - 1206513..1206623 (+) 111 WP_003155504.1 YfhE family protein -
  LGL65_RS06240 - 1206694..1206885 (+) 192 WP_003155508.1 YfhD family protein -
  LGL65_RS06245 - 1206924..1207508 (-) 585 WP_007408549.1 nitroreductase -
  LGL65_RS06250 - 1207585..1208468 (-) 884 Protein_1230 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.11 Da        Isoelectric Point: 6.0196

>NTDB_id=655948 LGL65_RS06225 WP_025650231.1 1204673..1205464(-) (recX) [Bacillus velezensis strain LOH112]
MPFITKISTQKNNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=655948 LGL65_RS06225 WP_025650231.1 1204673..1205464(-) (recX) [Bacillus velezensis strain LOH112]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAATAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTACTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAGATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATATCGGATGCGGTCTGAAAAAGAAGTC
CGGGATCACCTGAAGAAAAAAGAAACACCGGACATGGTTATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGCGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787