Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   L3Q72_RS15185 Genome accession   NZ_CP092107
Coordinates   61565..62662 (+) Length   365 a.a.
NCBI ID   WP_275133007.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 56565..67662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS15150 (L3Q72_15140) - 56647..56991 (-) 345 WP_275130148.1 hypothetical protein -
  L3Q72_RS15155 (L3Q72_15145) - 57196..58314 (+) 1119 WP_275130149.1 IS630 family transposase -
  L3Q72_RS15160 (L3Q72_15150) - 58425..58739 (-) 315 WP_275133002.1 DUF496 family protein -
  L3Q72_RS15165 (L3Q72_15155) - 58938..59123 (+) 186 WP_275133003.1 hypothetical protein -
  L3Q72_RS15170 (L3Q72_15160) - 59159..59806 (+) 648 WP_275133004.1 DUF480 domain-containing protein -
  L3Q72_RS15175 (L3Q72_15165) - 59810..60085 (+) 276 WP_275133005.1 GIY-YIG nuclease family protein -
  L3Q72_RS15180 (L3Q72_15170) traF 60253..61437 (+) 1185 WP_275133006.1 conjugal transfer protein TraF -
  L3Q72_RS15185 (L3Q72_15175) luxP 61565..62662 (+) 1098 WP_275133007.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  L3Q72_RS15190 (L3Q72_15180) - 62659..65193 (+) 2535 WP_275133008.1 LuxQ periplasmic sensor domain-containing protein -
  L3Q72_RS15195 (L3Q72_15185) - 65185..65847 (-) 663 WP_275133009.1 PilZ domain-containing protein -
  L3Q72_RS15200 (L3Q72_15190) - 65977..66276 (-) 300 WP_275133010.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41434.84 Da        Isoelectric Point: 5.9996

>NTDB_id=655924 L3Q72_RS15185 WP_275133007.1 61565..62662(+) (luxP) [Vibrio sp. JC009]
MKRTSSFFLGLSLLFTPFFSGADQISGYWSYQSYLEAFPHQKILTNVFNDVVRHKPEPIAVSGSEPVTISVVYPGEQVSD
YWRRNIKAFELRLDELNINYKLEQVFTKPNADTRQQSISLNAAIKNNTDYLIFTLDTSRHKKFIEHVLHGTDIKLILQNI
TTPVKGWEKKQPFFYVGFDHSMGTLALADYFKAVLPEESNYSVLYFSQGYISDVRGDTFINAMNKEGKFNLRSSYYTKAT
KQSGYETAKLMLEKSPETELIYACSTDVALGAVDALKELNRTDIRINGWGGGSAELESLQQGDLDVTVMRMNDDTGVAMA
EAIKWDLEGKAVPTVYSGSFELVTKSDSAERIERLKQYAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=655924 L3Q72_RS15185 WP_275133007.1 61565..62662(+) (luxP) [Vibrio sp. JC009]
ATGAAGCGGACTTCATCCTTTTTTCTGGGCCTGAGCCTTTTATTTACACCTTTTTTTTCAGGTGCTGATCAAATTAGCGG
TTATTGGAGTTACCAGTCCTATCTGGAGGCTTTTCCGCACCAGAAAATACTGACCAATGTGTTTAATGATGTGGTCAGGC
ATAAGCCTGAGCCTATCGCTGTCTCAGGTTCAGAGCCGGTAACCATTTCGGTTGTGTATCCCGGTGAGCAGGTTTCGGAT
TACTGGCGCCGCAATATTAAGGCGTTTGAACTTCGTCTCGATGAATTAAATATTAACTACAAACTTGAGCAGGTATTCAC
TAAACCTAATGCTGATACCCGGCAGCAGAGTATCTCGTTAAATGCCGCGATTAAAAATAATACCGATTACCTGATATTTA
CCTTAGATACCAGCCGACACAAAAAGTTTATTGAGCATGTTCTGCACGGGACAGATATCAAACTGATACTGCAGAATATC
ACCACCCCGGTGAAAGGCTGGGAAAAGAAGCAGCCTTTTTTCTATGTGGGGTTTGATCACTCAATGGGAACGCTGGCGCT
GGCGGACTATTTTAAAGCGGTTCTGCCGGAAGAGAGTAATTATTCGGTGCTCTATTTTTCCCAGGGATATATCAGTGATG
TCCGTGGTGACACCTTTATTAATGCGATGAACAAGGAAGGGAAGTTTAACCTGAGGTCATCTTATTATACCAAGGCAACA
AAGCAGAGCGGATACGAAACCGCAAAGCTGATGCTGGAGAAGAGCCCGGAAACCGAACTAATTTATGCCTGCTCTACCGA
TGTGGCGCTGGGGGCGGTGGATGCACTTAAAGAGCTCAACCGTACCGATATCAGAATCAATGGCTGGGGCGGTGGTTCTG
CCGAGTTAGAGTCTTTGCAGCAGGGCGATCTGGATGTTACCGTTATGCGGATGAACGACGATACCGGCGTAGCCATGGCC
GAAGCGATTAAGTGGGATCTGGAAGGTAAAGCCGTACCTACGGTTTATTCCGGTAGCTTTGAACTGGTAACAAAATCTGA
CAGCGCAGAACGAATCGAGCGCTTAAAACAATACGCATTCAGGTATTCTGACAGATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.76

100

0.641