Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   L3Q72_RS12250 Genome accession   NZ_CP092106
Coordinates   2755043..2755558 (-) Length   171 a.a.
NCBI ID   WP_275130231.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2750043..2760558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS12230 (L3Q72_12220) rpsP 2750611..2750859 (-) 249 WP_275130227.1 30S ribosomal protein S16 -
  L3Q72_RS12235 (L3Q72_12225) ffh 2751164..2752564 (-) 1401 WP_275130228.1 signal recognition particle protein -
  L3Q72_RS12240 (L3Q72_12230) - 2752766..2753566 (+) 801 WP_275130229.1 inner membrane protein YpjD -
  L3Q72_RS12245 (L3Q72_12235) - 2753646..2754917 (+) 1272 WP_275130230.1 CNNM domain-containing protein -
  L3Q72_RS12250 (L3Q72_12240) luxS 2755043..2755558 (-) 516 WP_275130231.1 S-ribosylhomocysteine lyase Regulator
  L3Q72_RS12255 (L3Q72_12245) gshA 2755603..2757180 (-) 1578 WP_275130232.1 glutamate--cysteine ligase -
  L3Q72_RS12260 (L3Q72_12250) - 2757225..2760083 (-) 2859 WP_275130233.1 pitrilysin family protein -
  L3Q72_RS12265 (L3Q72_12255) - 2760093..2760533 (-) 441 WP_275130234.1 YqaA family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18937.79 Da        Isoelectric Point: 4.4783

>NTDB_id=655916 L3Q72_RS12250 WP_275130231.1 2755043..2755558(-) (luxS) [Vibrio sp. JC009]
MPLLDSFTVDHTIMNAPAVRVAKTMQTPKGDTITVFDLRFCAPNKEILSEKGIHTLEHLYAGFMRAHLNGDDVEIIDISP
MGCRTGFYMSLIGTPAEERVVNAWIAAMEDVLKVESQDKIPELNEYQCGTYAMHSLDDAKAIAQKILDAGVSVNKNEELA
LPEAMLEELKV

Nucleotide


Download         Length: 516 bp        

>NTDB_id=655916 L3Q72_RS12250 WP_275130231.1 2755043..2755558(-) (luxS) [Vibrio sp. JC009]
ATGCCATTACTAGATAGCTTCACCGTCGACCATACAATAATGAATGCTCCGGCGGTTCGCGTAGCAAAAACAATGCAGAC
ACCAAAGGGTGATACCATCACTGTTTTTGACCTTCGTTTCTGCGCACCAAACAAAGAGATCCTGTCTGAAAAAGGTATTC
ACACACTTGAGCACCTTTACGCCGGCTTTATGCGCGCACACCTGAATGGTGACGATGTTGAGATCATCGATATCTCGCCA
ATGGGCTGCCGCACAGGTTTCTACATGAGTCTTATCGGCACACCTGCCGAAGAGCGCGTTGTAAACGCATGGATTGCAGC
AATGGAAGATGTTCTGAAAGTAGAAAGCCAGGATAAAATCCCAGAGCTGAACGAATACCAGTGCGGCACATACGCAATGC
ACTCGCTTGATGACGCAAAAGCTATTGCTCAGAAGATTCTGGATGCAGGGGTTTCAGTTAATAAGAATGAAGAACTTGCG
CTGCCGGAAGCTATGTTGGAAGAGTTGAAGGTTTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.871

100

0.819