Detailed information NTG0655915

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: L3Q72_RS12115
• Genome accession: NZ_CP092106
• Coordinates: 2727262..2728242 (-)
• Length: 326 a.a.
• NCBI ID: WP_275130205.1
• Uniprot ID: -
• Organism: Vibrio sp. JC009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2722262..2733242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3Q72_RS12095 (L3Q72_12085)	-	2722308..2722916 (+)	609	WP_275130201.1	peroxiredoxin C	-
L3Q72_RS12100 (L3Q72_12090)	ppk2	2723205..2723981 (+)	777	WP_275130202.1	polyphosphate kinase 2	-
L3Q72_RS12105 (L3Q72_12095)	-	2724069..2724551 (-)	483	WP_275130203.1	nicotinamide-nucleotide amidohydrolase family protein	-
L3Q72_RS12110 (L3Q72_12100)	mutS	2724642..2727206 (+)	2565	WP_275130204.1	DNA mismatch repair protein MutS	-
L3Q72_RS12115 (L3Q72_12105)	rpoS	2727262..2728242 (-)	981	WP_275130205.1	RNA polymerase sigma factor RpoS	Regulator
L3Q72_RS12120 (L3Q72_12110)	-	2728314..2729243 (-)	930	WP_275130206.1	peptidoglycan DD-metalloendopeptidase family protein	-
L3Q72_RS12125 (L3Q72_12115)	-	2729248..2729874 (-)	627	WP_275130207.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
L3Q72_RS12130 (L3Q72_12120)	surE	2729874..2730620 (-)	747	WP_275130208.1	5'/3'-nucleotidase SurE	-
L3Q72_RS12135 (L3Q72_12125)	truD	2730640..2731689 (-)	1050	WP_275130209.1	tRNA pseudouridine(13) synthase TruD	-
L3Q72_RS12140 (L3Q72_12130)	ispF	2731694..2732170 (-)	477	WP_275130210.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
L3Q72_RS12145 (L3Q72_12135)	ispD	2732167..2732874 (-)	708	WP_275130211.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
L3Q72_RS12150 (L3Q72_12140)	ftsB	2732891..2733172 (-)	282	WP_275130212.1	cell division protein FtsB	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37304.24 Da
• Isoelectric Point: 4.5900

>NTDB_id=655915 L3Q72_RS12115 WP_275130205.1 2727262..2728242(-) (rpoS) [Vibrio sp. JC009]
MSMSNTVTKTEEFDIADVSLDTLDNELVQQSQENTETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEDIAETLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDVNHSDPE
VSTQDDDIKSSLIGWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILMKQGLNMESL
FDVEQI

Nucleotide

• Length: 981 bp

>NTDB_id=655915 L3Q72_RS12115 WP_275130205.1 2727262..2728242(-) (rpoS) [Vibrio sp. JC009]
ATGAGTATGAGCAATACAGTAACTAAAACCGAAGAATTTGATATCGCAGATGTATCCTTAGATACACTGGATAACGAACT
CGTCCAACAGTCTCAGGAAAATACCGAAACCAAAGAAGAGTTTGATGCGAGCACCAAAAGCTTAGACGCAACTCAGCTAT
ATCTTGGCGAAATCGGTTTTTCACCACTACTTACTGCTGAAGAAGAAGTTCTTTATGCACGCCGTGCCCTAAGAGGGGAT
GAAGCCGCGCGTAAAAGAATGATTGAGAGTAACCTTCGTCTGGTCGTTAAAATTTCCCGCCGATACAGCAATCGCGGACT
GGCCCTTTTAGACCTGATTGAAGAAGGTAACCTTGGACTGATTCGCGCAGTTGAGAAGTTTGATCCTGAAAGAGGCTTCC
GTTTCTCTACTTACGCCACATGGTGGATTCGTCAGACGATTGAACGTGCGCTGATGAACCAGACCCGTACTATCCGTCTG
CCAATACATGTCGTTAAAGAGCTGAATATCTATCTGCGTACCGCTCGTGAGCTGTCTCAGAAGCTGGATCATGAACCAAC
AGCTGAAGATATTGCAGAGACTCTGGATAAGCCTGTAAGTGATGTAAGTAAGATGCTTCGCCTGAATGAGCGTGTCAGCT
CTGTTGATACACCAATCGGTGGTGACGGCGAGAAGGCTCTGCTGGATATTATTCCTGATGTAAACCATTCTGATCCGGAA
GTTTCCACTCAGGATGACGATATTAAGAGCTCGCTGATTGGCTGGCTGGATGAACTAAATCCTAAGCAGAAAGAAGTTCT
GGCAAGACGCTTTGGCCTGCTTGGTTATGAACCATCAACTCTGGAAGAAGTGGGCCGTGAGATAAGCCTGACCCGTGAAA
GAGTTCGTCAGATTCAGGTTGAAGGTCTGCGCAGACTAAGAGAAATTCTGATGAAGCAGGGACTGAACATGGAATCTCTG
TTTGATGTAGAGCAAATATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.735	100	0.853