Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L3Q72_RS09615 Genome accession   NZ_CP092106
Coordinates   2159567..2160982 (-) Length   471 a.a.
NCBI ID   WP_275129732.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2154567..2165982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS09580 (L3Q72_09570) moaE 2155309..2155761 (-) 453 WP_275129725.1 molybdopterin synthase catalytic subunit MoaE -
  L3Q72_RS09585 (L3Q72_09575) moaD 2155763..2156008 (-) 246 WP_275129726.1 molybdopterin synthase sulfur carrier subunit -
  L3Q72_RS09590 (L3Q72_09580) moaC 2156005..2156484 (-) 480 WP_275129727.1 cyclic pyranopterin monophosphate synthase MoaC -
  L3Q72_RS09595 (L3Q72_09585) moaB 2156491..2157003 (-) 513 WP_275129728.1 molybdenum cofactor biosynthesis protein B -
  L3Q72_RS09600 (L3Q72_09590) moaA 2157034..2158023 (-) 990 WP_275129729.1 GTP 3',8-cyclase MoaA -
  L3Q72_RS09605 (L3Q72_09595) - 2158307..2159197 (+) 891 WP_275129730.1 YvcK family protein -
  L3Q72_RS09610 (L3Q72_09600) - 2159217..2159570 (-) 354 WP_275129731.1 Hpt domain-containing protein -
  L3Q72_RS09615 (L3Q72_09605) luxO 2159567..2160982 (-) 1416 WP_275129732.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  L3Q72_RS09620 (L3Q72_09610) uvrB 2161256..2163286 (-) 2031 WP_275129733.1 excinuclease ABC subunit UvrB -
  L3Q72_RS09625 (L3Q72_09615) - 2163336..2163536 (-) 201 WP_275129734.1 hypothetical protein -
  L3Q72_RS09635 (L3Q72_09625) - 2164205..2165902 (+) 1698 WP_275129735.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52100.50 Da        Isoelectric Point: 5.0643

>NTDB_id=655912 L3Q72_RS09615 WP_275129732.1 2159567..2160982(-) (luxO) [Vibrio sp. JC009]
MNNPNTDPSAKKLLMVEDTASVAALYRSFLMPLGIDIEIVGTGKAAIESVEQRIPDLILLDLRLPDMTGMDVLYTVKQLD
ADVPVIFMTAHGSIGTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIHKAAKLKTADTQKTKANTGYQGFIGSSQMMQSVY
KTIDSAASSKASIFITGESGTGKEVCAEAIHAASTRRDKPFIAINCAAIPKDLIESELFGHMKGAFTGAATERQGAAELA
DGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPL
RDRGEDVVEIAYSLLGYMSMEEGKDFARFDSEVEAQFVNYEWPGNVRQLQNVIRNAVVLNNGKQITLNMLPPPLNQLSTK
IASIPDGRNDEEETTSLSSSEVFPLWMVEKRTIEQAIDAFDGNIPKAANALEVSPSTIYRKIQSWNKKDDK

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=655912 L3Q72_RS09615 WP_275129732.1 2159567..2160982(-) (luxO) [Vibrio sp. JC009]
ATGAATAATCCCAATACTGATCCCTCTGCAAAAAAGCTGCTGATGGTGGAAGATACCGCCTCTGTTGCTGCTCTTTATCG
CTCCTTTCTGATGCCTCTGGGTATCGACATAGAAATTGTTGGCACAGGTAAGGCTGCGATAGAAAGTGTAGAGCAGAGAA
TTCCCGATCTGATTCTTCTCGATTTACGACTTCCCGATATGACGGGGATGGACGTGCTGTATACCGTAAAGCAGTTAGAT
GCTGACGTACCGGTTATCTTTATGACGGCGCACGGCTCTATCGGTACTGCGGTAGAGGCCATGAGGCATGGTGCGCAGGA
CTTTCTGATTAAGCCGTGTGAGGCTGACCGTCTCAGGGTTACGGTGAACAACGCCATTCACAAAGCCGCAAAACTGAAAA
CCGCAGATACCCAGAAAACTAAGGCGAATACAGGTTATCAGGGCTTTATCGGCAGTAGTCAGATGATGCAGTCTGTATAC
AAAACCATTGACTCCGCGGCATCCAGTAAAGCCAGTATCTTTATCACCGGAGAGAGTGGTACAGGTAAAGAGGTGTGTGC
CGAGGCGATACACGCAGCCAGTACCCGCCGGGACAAGCCGTTTATTGCAATCAACTGTGCGGCGATACCTAAAGACCTGA
TTGAAAGTGAGCTGTTTGGTCATATGAAAGGGGCCTTCACCGGCGCCGCTACCGAGCGCCAGGGTGCGGCAGAACTGGCC
GACGGAGGTACGCTGTTCCTTGATGAGCTGTGTGAAATGGACCTGGATTTGCAGACCAAACTGCTGCGTTTTATCCAGAC
CGGCACCTTCCAGAAGGTGGGTTCATCAAAGATGAAGAGCGTTGATGTGCGCTTTGTCTGTGCAACCAACAGAGACCCGT
GGAAAGAGGTTCAGGAAGGACGTTTCCGTGAAGATTTGTACTACCGCCTGTACGTTATTCCTCTGCATCTGCCGCCGCTG
AGAGACCGTGGCGAAGACGTGGTCGAGATTGCTTATTCTCTTCTGGGTTATATGTCCATGGAAGAGGGGAAAGATTTTGC
AAGGTTTGACAGCGAAGTTGAAGCGCAGTTTGTCAACTACGAATGGCCGGGAAATGTCAGGCAGTTGCAAAACGTAATCC
GCAACGCTGTTGTATTAAATAACGGTAAGCAGATCACACTAAATATGCTTCCGCCGCCGCTTAACCAACTGAGCACAAAA
ATTGCAAGCATTCCAGATGGAAGAAATGATGAAGAGGAAACAACAAGCCTTTCTTCTTCTGAAGTTTTTCCGCTTTGGAT
GGTTGAGAAGAGAACCATTGAACAAGCAATCGATGCTTTTGACGGAAATATCCCTAAAGCGGCGAATGCTCTGGAAGTGA
GTCCTTCAACCATTTACAGAAAAATTCAGAGCTGGAATAAAAAGGACGATAAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(425-463)

Sigma-54 interaction domain (Sigma54_activat)

(150-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

80.132

96.178

0.771