Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   L3Q72_RS06860 Genome accession   NZ_CP092106
Coordinates   1496579..1498003 (-) Length   474 a.a.
NCBI ID   WP_275132082.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1491579..1503003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS06835 (L3Q72_06825) ihfA 1492722..1493018 (+) 297 WP_275131903.1 integration host factor subunit alpha -
  L3Q72_RS06840 (L3Q72_06830) purT 1493076..1494254 (-) 1179 WP_275131904.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  L3Q72_RS06845 (L3Q72_06835) cdd 1494399..1495286 (-) 888 WP_275131905.1 cytidine deaminase -
  L3Q72_RS06850 (L3Q72_06840) - 1495529..1496218 (-) 690 WP_275131906.1 LrgB family protein -
  L3Q72_RS06855 (L3Q72_06845) - 1496215..1496577 (-) 363 WP_275131907.1 CidA/LrgA family protein -
  L3Q72_RS06860 (L3Q72_06850) sbcB 1496579..1498003 (-) 1425 WP_275132082.1 exodeoxyribonuclease I Machinery gene
  L3Q72_RS06865 (L3Q72_06855) cobT 1498178..1499206 (+) 1029 WP_275131908.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  L3Q72_RS06870 (L3Q72_06860) - 1499363..1500391 (+) 1029 WP_275131909.1 succinylglutamate desuccinylase -
  L3Q72_RS06875 (L3Q72_06865) - 1500671..1501243 (-) 573 WP_275131910.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  L3Q72_RS06880 (L3Q72_06870) - 1501261..1501497 (-) 237 WP_275131911.1 glutaredoxin family protein -
  L3Q72_RS06885 (L3Q72_06875) - 1501588..1502082 (+) 495 WP_275131912.1 M48 family metallopeptidase -
  L3Q72_RS06890 (L3Q72_06880) - 1502134..1502700 (-) 567 WP_275131913.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54267.44 Da        Isoelectric Point: 5.0753

>NTDB_id=655908 L3Q72_RS06860 WP_275132082.1 1496579..1498003(-) (sbcB) [Vibrio sp. JC009]
MQHEHQPTFFFFDYETWGTNPATDRPSQFAGVRTDMNFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAASQGLPEP
EFIRRIHEELSTPNTTSLGYNSIRFDDEVSRYTLYRNFYDPYAWSWQNGNSRWDLLDVMRTCYALRPEGIVWPEDEEGLP
SFKLERLSVANGIEHANAHDAMADVIATIELAKKLKAAQPKLFDYLYSMRGKRKVTDLIDIVNMTPLVHVSGMFGRECSN
TSWIVPVAWHPKNPNAAITVNLAMDVTPLIKLDSEQLKERLYTKRDDLAPDESPVPVKLVHMNKCPILAPAKTLTAENAE
NIGINREQCLANLATLKQHPEIREKLISLYSEEREYPAGDNVDTQLYSGFFSNADKASIDIIRQTNPEHLAALDISFEDD
RIAPLLFRYRARNFPHTLTQDEQIKWAAHCRDYFEQKLPDYMLNLENLAHEHESDEKKMAILKSVYKYVENLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=655908 L3Q72_RS06860 WP_275132082.1 1496579..1498003(-) (sbcB) [Vibrio sp. JC009]
ATGCAGCATGAACACCAGCCCACGTTTTTCTTCTTTGATTACGAAACTTGGGGGACAAATCCCGCAACCGACAGGCCAAG
CCAGTTTGCCGGTGTTCGTACCGACATGAATTTTAATATTATTGGTGAGCCGCTGGTGATTTACTGTCAGCCGCCAGCCG
ATTACCTGCCCTCCCCTGAGGCTGCGCTTATTACCGGCATCACACCTCAAAAAGCGGCCTCACAGGGCCTTCCTGAGCCT
GAGTTTATCCGTCGTATCCATGAGGAGCTTTCAACGCCAAATACCACAAGTCTTGGTTATAACAGCATCCGTTTTGATGA
TGAAGTCAGCCGCTATACCCTGTACAGGAATTTCTATGACCCTTATGCATGGAGCTGGCAAAACGGTAACTCTCGCTGGG
ACCTGCTGGATGTGATGCGTACCTGTTATGCGCTGCGCCCGGAAGGAATTGTCTGGCCTGAAGATGAAGAAGGTTTGCCA
AGCTTTAAGCTTGAGCGCCTTTCGGTTGCCAACGGCATTGAACACGCAAATGCGCACGATGCAATGGCAGATGTGATTGC
AACCATTGAACTGGCTAAAAAGCTGAAAGCGGCACAGCCTAAGTTATTTGATTATCTGTACAGCATGCGTGGTAAACGTA
AAGTTACAGATCTTATCGATATCGTCAATATGACTCCGCTGGTTCATGTTTCCGGCATGTTTGGCCGGGAGTGTTCAAAT
ACCAGCTGGATTGTTCCTGTCGCCTGGCACCCTAAGAATCCTAATGCCGCAATCACGGTAAATCTGGCAATGGATGTAAC
TCCGCTTATTAAACTGGATAGTGAGCAGCTAAAAGAGCGTCTATACACAAAACGGGATGATCTGGCTCCGGATGAATCTC
CGGTACCGGTTAAACTGGTCCATATGAACAAATGCCCGATCCTGGCACCGGCAAAAACACTTACCGCAGAGAATGCCGAA
AATATCGGTATTAACCGTGAGCAGTGTCTTGCGAATCTGGCCACGCTCAAACAGCACCCAGAGATCCGGGAAAAACTCAT
TTCTCTCTACTCAGAAGAGAGAGAGTACCCAGCAGGCGATAATGTCGATACCCAGCTGTACTCCGGATTTTTCTCAAATG
CAGATAAAGCCTCTATCGACATTATCCGCCAGACCAATCCTGAGCACCTTGCGGCACTGGATATCTCCTTTGAAGATGAC
CGGATTGCCCCTTTACTGTTTCGCTACAGAGCGCGAAACTTCCCGCATACACTGACTCAGGATGAGCAAATTAAGTGGGC
CGCGCATTGCCGTGATTACTTCGAGCAAAAGCTTCCCGACTATATGCTTAATCTTGAAAACCTGGCTCATGAGCATGAAT
CAGATGAAAAGAAAATGGCTATCCTGAAATCTGTTTATAAATATGTAGAAAACCTAGTTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.636

99.578

0.753