Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   OXB_RS09190 Genome accession   NZ_AP013294
Coordinates   1871655..1873790 (+) Length   711 a.a.
NCBI ID   WP_084212551.1    Uniprot ID   -
Organism   Bacillus sp. OxB-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866655..1878790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXB_RS09155 (OXB_1790) - 1867111..1867917 (-) 807 WP_041073643.1 Cof-type HAD-IIB family hydrolase -
  OXB_RS09160 (OXB_1791) - 1868056..1868829 (+) 774 WP_041073645.1 prolyl oligopeptidase family serine peptidase -
  OXB_RS09165 (OXB_1792) - 1868872..1869180 (+) 309 WP_041073647.1 metal-sulfur cluster assembly factor -
  OXB_RS18845 (OXB_1793) - 1869492..1870013 (+) 522 WP_158333667.1 hypothetical protein -
  OXB_RS09180 (OXB_1794) - 1870548..1870880 (+) 333 WP_052483958.1 hypothetical protein -
  OXB_RS09185 (OXB_1795) rraA 1870994..1871476 (+) 483 WP_041073656.1 ribonuclease E activity regulator RraA -
  OXB_RS09190 (OXB_1796) clpC 1871655..1873790 (+) 2136 WP_084212551.1 AAA family ATPase Regulator
  OXB_RS09195 (OXB_1797) - 1874243..1874425 (-) 183 WP_041073658.1 DUF2929 family protein -
  OXB_RS09200 (OXB_1798) - 1874611..1875543 (+) 933 WP_041073661.1 beta-ketoacyl-ACP synthase III -
  OXB_RS09205 (OXB_1799) fabF 1875616..1876857 (+) 1242 WP_041073663.1 beta-ketoacyl-ACP synthase II -
  OXB_RS09210 (OXB_1802) trpS 1877321..1878307 (-) 987 WP_041073665.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 80766.07 Da        Isoelectric Point: 4.7013

>NTDB_id=65590 OXB_RS09190 WP_084212551.1 1871655..1873790(+) (clpC) [Bacillus sp. OxB-1]
MDTQQEDQRTPLEQFGRNLVDEVKNGKMDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP
EGLKDRQIFELDMSALIAGAKYRGEFEERLKGVLKQVKDSDGEIILFIDEIHTIVGAGKTEGAMDAGNMLKPMLARGELY
CIGATTLDEYRMYIEKDPALERRFQQVMVREPSVEDTVSILRGLKERFELHHGVRIHDRAIVAAAALSDRYLTERFLPDK
AIDLIDEASAMIRTEIDSMPSELDAVTRRIMQLEIEEQALRKEKDAVSQTRLETLREELKGLKESSAGMREQWDQEKEAL
RGIQEKREELDRFRRDLEDAQNRFDLNRAAELQYGKIPALEQELQELEQPLLESQENRLLREEVTEEEIATIVARWTGIP
VTKLVEGEREKLLRLRETLEERVIGQDDAVQLVTEAVWRARAGIKDPHKPIGSFLFLGPTGVGKTELAKTLAASLFDSED
HFIRIDMSEYMEKHSVSRLVGAPPGYIGYEEGGQLTEAVRRNPYSVVLLDEIEKAHPDVSNILLQILDDGRITDSQGRLV
NFTNTVVIMTSNIGSAYLLNELDDTENHAAEDLVMAELRRHFKPELLNRMDDIIIFHSLKADAFSRIARKMLEELVKRLE
EQEVILTYDDAVVDWIVREGTDADFGARPLKRFIQRNVETVVAKEIIKGEIRPGEVLALSMVDGKLDVHKG

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=65590 OXB_RS09190 WP_084212551.1 1871655..1873790(+) (clpC) [Bacillus sp. OxB-1]
ATGGATACTCAACAGGAAGATCAACGCACACCGCTTGAGCAGTTCGGACGCAATCTTGTGGATGAAGTTAAAAACGGGAA
AATGGATCCGGTCATCGGCCGGGATGAAGAAATCCGGAATGTCATTCGAATTTTATCAAGGAAGACGAAAAACAACCCAG
TACTCATCGGAGAGCCGGGGGTCGGGAAGACGGCAATCGTCGAAGGACTGGCCCAACGGATTGTCAAAGGGGATGTGCCG
GAAGGATTGAAAGACCGTCAAATCTTCGAGCTGGATATGAGTGCATTGATTGCAGGAGCCAAATATCGCGGGGAATTTGA
GGAACGATTGAAAGGCGTCTTGAAGCAGGTCAAGGACAGCGATGGGGAGATCATTCTTTTCATTGATGAAATCCATACGA
TTGTCGGTGCCGGGAAGACGGAAGGCGCGATGGACGCGGGCAATATGCTGAAACCGATGCTCGCACGCGGCGAGTTGTAC
TGCATCGGCGCGACGACGCTGGATGAATACCGGATGTACATCGAGAAGGATCCGGCGCTTGAGCGGCGGTTCCAACAAGT
GATGGTGCGCGAACCGTCCGTCGAGGATACGGTGTCCATCTTGCGTGGGTTGAAAGAGCGCTTCGAGCTGCACCACGGAG
TCCGCATCCATGACCGGGCGATCGTAGCGGCGGCTGCGTTATCGGACCGGTATTTAACGGAACGCTTTTTGCCGGATAAA
GCGATTGACTTGATCGACGAAGCGAGCGCGATGATCCGGACGGAAATCGACTCCATGCCGAGCGAATTGGATGCGGTGAC
CCGGCGGATCATGCAACTGGAGATCGAGGAACAGGCACTTCGGAAAGAGAAGGACGCGGTGAGCCAAACACGGCTTGAAA
CGCTGCGGGAAGAATTGAAAGGATTGAAGGAGTCCTCCGCCGGCATGCGGGAGCAATGGGATCAAGAGAAAGAGGCATTG
CGTGGAATCCAGGAGAAGCGGGAGGAGCTGGACCGCTTCCGCCGCGATTTGGAAGATGCGCAAAACCGGTTTGATTTGAA
CCGGGCGGCCGAGCTCCAATATGGCAAGATCCCCGCTTTGGAGCAAGAGTTGCAGGAGCTGGAGCAGCCGTTGTTGGAGA
GCCAGGAGAATCGGTTATTGAGGGAAGAAGTGACCGAAGAAGAGATTGCAACGATCGTGGCACGCTGGACCGGAATCCCG
GTCACCAAGTTGGTGGAAGGGGAGCGGGAAAAATTGTTGCGCCTCCGCGAAACGCTGGAGGAGCGGGTCATCGGCCAAGA
CGATGCCGTCCAACTCGTAACGGAAGCAGTATGGCGGGCGCGGGCGGGCATCAAAGATCCGCATAAGCCGATCGGTTCGT
TCCTGTTCCTCGGTCCGACGGGTGTCGGGAAAACGGAATTGGCGAAAACGTTGGCCGCGTCATTATTCGACTCGGAAGAC
CATTTCATCCGGATCGACATGTCCGAATACATGGAGAAGCATAGCGTTTCCAGACTCGTCGGGGCGCCTCCGGGGTATAT
CGGCTACGAAGAAGGAGGCCAGTTGACGGAAGCAGTCCGGCGCAATCCGTACTCTGTCGTCCTGCTCGATGAAATCGAAA
AGGCGCATCCGGATGTCTCGAACATCTTGTTGCAAATTTTGGATGACGGCCGGATCACCGACAGCCAAGGCAGATTGGTC
AACTTCACGAATACGGTCGTGATCATGACATCCAACATCGGCTCAGCTTATTTGTTGAACGAACTGGACGATACGGAAAA
TCACGCAGCCGAAGATTTGGTCATGGCCGAGTTGAGACGCCATTTCAAACCGGAATTATTGAACCGGATGGATGATATTA
TTATCTTCCACTCCCTCAAAGCAGACGCATTTTCACGGATTGCCCGGAAAATGCTGGAGGAGCTGGTGAAACGGCTTGAG
GAGCAGGAAGTCATCTTGACTTATGACGATGCCGTCGTCGACTGGATCGTCCGGGAAGGCACGGACGCCGATTTCGGGGC
CCGTCCGCTGAAGCGCTTCATCCAGCGGAACGTCGAAACCGTCGTCGCCAAAGAAATCATCAAAGGCGAAATCCGTCCAG
GCGAAGTGTTGGCATTGTCGATGGTGGATGGGAAACTGGATGTTCATAAAGGGTGA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(449-613)

AAA lid domain (AAA_lid_9)

(193-294)

ATPase family associated with various cellular activities (AAA) (AAA)

(54-188)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(619-696)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

51.899

100

0.519
  clpE Streptococcus mutans UA159

46.423

96.343

0.447
  clpC Lactococcus lactis subsp. cremoris KW2

45.994

94.796

0.436
  clpE Streptococcus pneumoniae Rx1

45.037

94.937

0.428
  clpE Streptococcus pneumoniae D39

45.037

94.937

0.428
  clpE Streptococcus pneumoniae R6

45.037

94.937

0.428
  clpE Streptococcus pneumoniae TIGR4

45.037

94.937

0.428

Multiple sequence alignment